RNA id: TU1737536


Basic Information

Item Value
RNA id TU1737536
length 1459
RNA type TUCP
GC content 0.44
exon number 2
gene id G1517822
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12020772 ~ 12023228 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccctccacattaAGTCTCCACGTGTGAGCAGAATTCTCTCCAGCATTTGGATATGAAGCAACTCTATGAAAAAAAATACTTAACATACTTAAACAAGACTTACATacattcaactatgacagataaaactGAGGCAAAACCAAGGTCATTTTATGTGCCAGACATAAACTCCCACAGAGGGACTAAACCCTAGTCTAGACAGAAGGGAGAAGACCGCTGGACAGGGAAATACACTGACAGGAAATGAACATTCTAATGGGTGGTCCATCTTGTACTACTGTAACATAGTTATAAATAAGTAGCCATCAATGACCAtgcaaattcaaaccacagacaacaacacatgaTAACACATTCAATGCTAATGgctgtaaaataaaacaattgtaaCTGTACACTGTATCAAAAAAATCCACTGTGACGTTTAGTTACTTGTCTTGTCATAAAGAGAGCCATAATGAGCCTGCCAATCTTAATACATAATCCAGTGCTTAAGGTCCATGTACATTAGGTTTCCTTTGTCCTTTACAGAATGGAAGTCATTATATCACCAGTAGGCCCAACAAGTTCATTGCACTGTACTCCTCTTGGGTCAGAGGTTGTTGTAGAGTCTCAGGCTCTTGGGTCAGAGGTTGTTGTAGAGTCTCAGGCTCTTGGGTCAGAGGTTGTTGTAGAGTCTCAGGCTCTTGGGTCAGAGGTTGTTGTAGAGTCTCGGGCTCTTGGGTCAGAAGTTGTTGTAGAGTCTCAGGCTCTTGGGTCAGAGGTTGTTGTGCAGTTGCAGGCTCTTCAGTCCACAGGATGAAACGGCAAGATTGATTCCTTACACTAAAACCCTTAAGGTAGTGTAGGTAGTGTCCATTCCTTACACTAAAACCCTTAAGGTAGTGTAGGTAGTGTCCATTCCTCACACTAAAACCCTTAAGGTAGTGTAGGTAGTGTCCATGCCTTTACACAGGTGTCTCTAGTTAAGTGCCTATTCTGTCCTCGTGAAGTTAAAGTGGATCAGTTGAAGGTAACTGTATTGACCAGATCAAGAGGCTGAGTAGTGCTCCCTATAAACGTTCATGTACTTTTTCACCATCATCCAATTGCTGTGAAGGCTACTGCCAAGAAGTTTGAGAAAATGTTCTAGAATATGGTGGGAAAAGAGTTCCAAATTGTCTGCAGCCATTTCAACTAAAAGTTTAACTGCCACTGTGTAACTGTACAGACCCAAGACCCACGACTTCCGACCTTCAGCCTCAGGCAAACGGGTTGTCCGACCGGAGTATGGTGGGTGTCACCGTCTCGACGTCGTGGTAGCTGTTCTTGCCGTTCATGTGTTCGGTGTGCCCGTCGATGCTGTAGCAGCGATGCACCTCCGTCAGGGATGACGCCACGTATGAGGCTGAGCGGAAGACATCTGCATGGGCAAAGTTACTGCCAAACTGGATCCTCTGCTGGTTCCAGTGCCTTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1737500 lncRNA downstream 25626 11994038 ~ 11995146 (-) True G1517807
TU1737488 lncRNA downstream 41500 11975921 ~ 11979272 (-) True G1517796
TU1737461 lncRNA downstream 48360 11946194 ~ 11972412 (-) True LOC110527304
TU1737452 lncRNA downstream 48452 11946194 ~ 11972320 (-) False LOC110527304
TU1737482 lncRNA upstream 20586 12043026 ~ 12043377 (-) True G1517793
TU1737561 lncRNA upstream 66242 12088682 ~ 12088909 (-) True G1517840
TU1737564 lncRNA upstream 83125 12105565 ~ 12161226 (-) False G1517842
TU1737576 lncRNA upstream 90025 12112465 ~ 12113094 (-) True G1517848
TU1737568 lncRNA upstream 94849 12117289 ~ 12161226 (-) False G1517842
XM_036951860.1 mRNA downstream 48112 11928580 ~ 11972660 (-) False LOC110527304
XM_036951859.1 mRNA downstream 48112 11940489 ~ 11972660 (-) False LOC110527304
XM_036951858.1 mRNA downstream 48113 11940489 ~ 11972659 (-) False LOC110527304
XM_036951862.1 mRNA downstream 48115 11940489 ~ 11972657 (-) False LOC110527304
XM_036951857.1 mRNA downstream 76609 11926474 ~ 11944163 (-) False LOC110527304
XR_005037375.1 mRNA upstream 23587 12046027 ~ 12049827 (-) False LOC110527249
XR_005037376.1 mRNA upstream 23587 12046027 ~ 12049827 (-) True LOC110527249
XM_036951865.1 mRNA upstream 37832 12060272 ~ 12065637 (-) False LOC110518257
XM_036951866.1 mRNA upstream 37832 12060272 ~ 12065637 (-) False LOC110518257
XM_036951867.1 mRNA upstream 37832 12060272 ~ 12065637 (-) False LOC110518257
TU1737445 other downstream 48452 11944896 ~ 11972320 (-) False LOC110527304
TU1737466 other downstream 72427 11947565 ~ 11948345 (-) True G1517784
TU1737459 other downstream 74833 11939130 ~ 11945939 (-) False LOC110527304
TU1737456 other downstream 77691 11941374 ~ 11943081 (-) False LOC110527304
TU1737190 other downstream 274859 11609036 ~ 11745913 (-) True LOC110528752
TU1737601 other upstream 217794 12240234 ~ 12245743 (-) False LOC110512633
TU1737603 other upstream 217794 12240234 ~ 12245743 (-) True LOC110512633
TU1737633 other upstream 238352 12260792 ~ 12263069 (-) True LOC110495544
TU1737645 other upstream 262638 12285078 ~ 12285632 (-) True G1517902
TU1737778 other upstream 561288 12583728 ~ 12600331 (-) False G1518019

Expression Profile