RNA id: TU1736835


Basic Information

Item Value
RNA id TU1736835
length 1288
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1517274
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12346446 ~ 12348016 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTCTCTTAACCTGCTACGTTATACTGAGTAAGTTCTCCTagcctgctacgttaattctcctaacttgCTGAGTAAGTTCTCTTAACCTGCTACGTTATACTGAGTAAGTTCTCCTAGCCTGCTACgatagttctcctaacctgctgagtaaattctcctaatctgcttcgttaattctcctaacctgctgagtAAATTCTCCTAGCCTGCTACTAAAAGCCCCCCCACCACAAAACATCTTCCTGCGGCCATAATAGTGCCGTTGGCATTGTAAATAGTGGTTGATTGAATTTCAAATTCAAACTACAATGTGGAGGAGTAGATGAAAGTGATTTGTGTGTGAAAGTGATCTAAATGTAGCTAATGTCACAGATTACGGCAGTTTGGAATGTGACATTTAAGCCTTCATTAATATTTATAGACTGTATTTCATTGTGCCCTTACTGCCTGTATTCACATACATATCTACAGAAACCAAAGGAGTAATCATGGGCCAATCTTGCCCATTAAGAAAGGTAGTAAACATCAAAGGTCTGATGAGTTGTTTCCCTCCATTCTAATCTTGATTTAGCTGTTGTGACCTGGGGAAGTATGACAGATTAGTTGACTTTGCTAATTTGTCTCTTGGAAGTTTGTTTCATGTTTGTGTTTTTTCTTATGCTCCACGGTGTCGTAAAATGTATTTGATGACATTTTCCAAAGCTAACTTTGTATTCACCTTAGCATGTTGTCAACGATAGAGCACTTTCTTGTCTCTTATTGGgcagtggtagtgtgtgtatttTATTGAATCCTCTTGGCTGAGACTGGAGAAGGAGAATGCAATGCACATCGTCCGGTTTCATTTGGTTTTGAATAGATGGGAAACAGCTTTATTCAAatttgacttttcgtagcaggttaggagaacgtACTCAGCCGGTAAGGAGAATTAACGCAATCGGTTAtaagaattaggttaaggttggGAAAACAGTTAAGGTTAGCTAAAATGGCCCCAAAAAAATCTACTTTtgatgttaatttgacaaaagctggagcCCTTCTAGCCATGACTGTTTCATTTGACTAGAGGCACATGTCAGATAATATGGCTGCAGGCTACCTGTTCATTCCATGATGAGCTCCGTTGGGCTTCTTTCCTGATGTAGCTGGGGGTCACAGGAGGTACCAGGTCACATTCAGCACTCTGGTGTTCTGGGGCCACGCTTGACCTTTAGTGCAGTTGTGCAGGACAACATTCCTCCAATGCATAAATAAGAATATTCTTTATATGCTACAAAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1736800 lncRNA upstream 61111 12285296 ~ 12285618 (+) True G1517256
TU1736798 lncRNA upstream 73930 12272169 ~ 12272799 (+) True G1517254
TU1736601 lncRNA upstream 100342 12245883 ~ 12246387 (+) True G1517116
TU1736766 lncRNA upstream 141315 12204138 ~ 12205414 (+) True G1517233
TU1736765 lncRNA upstream 142025 12204138 ~ 12204704 (+) False G1517233
TU1736837 lncRNA downstream 6080 12354096 ~ 12356750 (+) True G1517276
TU1736839 lncRNA downstream 9899 12357915 ~ 12359042 (+) True G1517278
TU1736840 lncRNA downstream 11363 12359379 ~ 12360709 (+) True G1517279
TU1736838 lncRNA downstream 17290 12365306 ~ 12366088 (+) True G1517277
TU1736846 lncRNA downstream 19531 12367547 ~ 12376288 (+) True G1517284
XM_036951378.1 mRNA upstream 1871 12343695 ~ 12344858 (+) True LOC118941038
XM_036951338.1 mRNA upstream 16161 12318790 ~ 12330568 (+) True LOC110495542
XM_036951373.1 mRNA upstream 29136 12308955 ~ 12317593 (+) False LOC118941037
XM_036951322.1 mRNA downstream 33409 12381425 ~ 12385624 (+) False LOC110495532
XM_036951323.1 mRNA downstream 33409 12381425 ~ 12385624 (+) False LOC110495532
XM_036951324.1 mRNA downstream 33409 12381425 ~ 12385624 (+) False LOC110495532
XM_021570829.2 mRNA downstream 33410 12381426 ~ 12385624 (+) False LOC110495532
XM_021570831.2 mRNA downstream 33410 12381426 ~ 12385624 (+) False LOC110495532
TU1736637 other upstream 405624 11940062 ~ 11941105 (+) False G1517150
TU1736489 other upstream 702971 11642789 ~ 11643758 (+) True G1517019
TU1736485 other upstream 711750 11633067 ~ 11634979 (+) True G1517015
TU1735957 other upstream 1254175 11086085 ~ 11092554 (+) True LOC118941092
TU1735992 other upstream 1329640 11016765 ~ 11017089 (+) True G1516637
TU1736988 other downstream 485635 12833651 ~ 12872163 (+) True G1517414
TU1737033 other downstream 586638 12934654 ~ 12936278 (+) True G1517456
TU1737034 other downstream 589507 12937523 ~ 12942494 (+) True G1517457
TU1737133 other downstream 839085 13187101 ~ 13188080 (+) True G1517545
TU1739079 other downstream 2086746 14434762 ~ 14436120 (+) True G1519096

Expression Profile