RNA id: TU1737715


Basic Information

Item Value
RNA id TU1737715
length 222
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G1517963
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12433714 ~ 12433935 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCTCAAACCCCAACCTTGTGTTCTCATCCCACACCTCAAACCCCAACCTTGTGCTCTCATCCCACACCTCAAACCCCAACCTTGTGTTCTCATCCCACACCTCAAACCCCAACCTTGTGCTCTCATCCCACACCTCAAACCCCAACCTTGTGTTAGATTTTTCTCCCACtctttcttcatccctctctctcacttttcctccatctatcctccatctctc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1737707 lncRNA downstream 18623 12413632 ~ 12415091 (-) False G1517955
TU1737706 lncRNA downstream 18623 12414422 ~ 12415091 (-) True G1517955
TU1737699 lncRNA downstream 27833 12404588 ~ 12405881 (-) True G1517951
TU1737695 lncRNA downstream 31616 12395818 ~ 12402098 (-) True G1517948
TU1737680 lncRNA downstream 72882 12359370 ~ 12360832 (-) True G1517935
TU1737717 lncRNA upstream 1671 12435606 ~ 12435967 (-) True G1517965
TU1737722 lncRNA upstream 11355 12445290 ~ 12445526 (-) True G1517970
TU1737741 lncRNA upstream 65111 12499046 ~ 12499805 (-) True G1517987
TU1737755 lncRNA upstream 102424 12536359 ~ 12536584 (-) True G1517998
TU1737756 lncRNA upstream 104100 12538035 ~ 12538263 (-) True G1517999
XM_036951317.1 mRNA downstream 52721 12354052 ~ 12380993 (-) False LOC110516060
XM_036951318.1 mRNA downstream 52721 12354052 ~ 12380993 (-) False LOC110516060
XR_005037321.1 mRNA downstream 52721 12357713 ~ 12380993 (-) True LOC110516060
XM_036951309.1 mRNA downstream 91384 12330934 ~ 12342330 (-) True LOC110497022
NM_001165102.1 mRNA downstream 145660 12281635 ~ 12288054 (-) True ck073
XM_036951293.1 mRNA upstream 36149 12470084 ~ 12506726 (-) False LOC110528732
XM_036951294.1 mRNA upstream 36149 12470084 ~ 12506726 (-) False LOC110528732
XM_036951295.1 mRNA upstream 36149 12470084 ~ 12506726 (-) False LOC110528732
XM_036951296.1 mRNA upstream 36149 12470084 ~ 12506726 (-) False LOC110528732
XM_036951297.1 mRNA upstream 36149 12470084 ~ 12506726 (-) True LOC110528732
TU1737645 other downstream 148082 12285078 ~ 12285632 (-) True G1517902
TU1737633 other downstream 170645 12260792 ~ 12263069 (-) True LOC110495544
TU1737601 other downstream 187971 12240234 ~ 12245743 (-) False LOC110512633
TU1737603 other downstream 187971 12240234 ~ 12245743 (-) True LOC110512633
TU1737536 other downstream 411274 12020772 ~ 12022440 (-) False G1517822
TU1737778 other upstream 149793 12583728 ~ 12600331 (-) False G1518019
TU1737781 other upstream 149793 12583728 ~ 12600331 (-) False G1518019
TU1737782 other upstream 149793 12583728 ~ 12600331 (-) True G1518019
TU1737893 other upstream 472276 12906211 ~ 12910842 (-) True LOC110495512
TU1737891 other upstream 537718 12971653 ~ 12976441 (-) True LOC110513917

Expression Profile