RNA id: TU1737735


Basic Information

Item Value
RNA id TU1737735
length 780
lncRNA type intronic
GC content 0.30
exon number 1
gene id G1517981
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12554270 ~ 12555049 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaagtcaaaaagtatttggtttgaaatgtactaaagtatcaaaagtaaatgtaatttcagaaatgtactaaagtatcaaaagtaaaagtgtaaatcatttcaaatgtcttatattaagcaaatgaGTTGGCACAATTGttcgtgtttttttttatttacggatagccaggggcagactcccaacactcagacattcagAAACAAACCaaaggatgttctcttgataagtgtgtgaattggaccatttctgtcctacttcaaaatgtaacgagtacttttgggtgtcagggaaaatgtatggagtaaaaagtacatacttttctttaggaatgtagtgaagtaaaagttgtcataaatagtaaagtacagataccaaaaaaaactacttaagtagtactttaaagtaattttacttaagtactttacaccactgattttAGCTAACCTTAAACATTTTCAGAACCTTAGCCTAATTCTTATTTTAATTAAATTTTTAAATTTTTAATtttataactaggcaagtcagttaagaacaaattcttattttattatttatataacacgttacgttaattatcctaacttgctgcgtaagttctcctaacctactacgaAAATCCCCTTCTGGTCAATTCTGACAAACCGTTTCCCTTTTAGTCAAAACGAGTGAACAGCAAGCAAGTATTATCTGCCACACCAAAATACATAACAGTATTAGTATACTGTGTGTAGCCTAATAAGGCGATATGTTTATGTTGTCATCAATTCAGAAAAAATG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1737757 lncRNA downstream 4280 12542254 ~ 12549990 (-) True G1518000
TU1737756 lncRNA downstream 16007 12538035 ~ 12538263 (-) True G1517999
TU1737755 lncRNA downstream 17686 12536359 ~ 12536584 (-) True G1517998
TU1737741 lncRNA downstream 54465 12499046 ~ 12499805 (-) True G1517987
TU1737722 lncRNA downstream 108744 12445290 ~ 12445526 (-) True G1517970
TU1737749 lncRNA upstream 7766 12562815 ~ 12566021 (-) True G1517994
TU1737764 lncRNA upstream 16454 12571503 ~ 12583644 (-) True LOC118941039
TU1737817 lncRNA upstream 96590 12651639 ~ 12653753 (-) True G1518044
TU1737852 lncRNA upstream 149945 12704994 ~ 12705267 (-) True G1518076
TU1737858 lncRNA upstream 164142 12719191 ~ 12719426 (-) True G1518082
XM_021608380.2 mRNA downstream 399 12552668 ~ 12553871 (-) True LOC110527216
XM_036951293.1 mRNA downstream 47544 12470084 ~ 12506726 (-) False LOC110528732
XR_005037324.1 mRNA upstream 16673 12571722 ~ 12572389 (-) False LOC118941039
XM_021570828.2 mRNA upstream 56965 12612014 ~ 12616159 (-) True LOC110495529
XM_036951372.1 mRNA upstream 110797 12665846 ~ 12677668 (-) True LOC118941036
XM_036951370.1 mRNA upstream 128060 12683109 ~ 12695620 (-) True LOC110527208
XM_036951346.1 mRNA upstream 274554 12829603 ~ 12833072 (-) True LOC110527202
TU1737645 other downstream 268638 12285078 ~ 12285632 (-) True G1517902
TU1737633 other downstream 291201 12260792 ~ 12263069 (-) True LOC110495544
TU1737601 other downstream 308527 12240234 ~ 12245743 (-) False LOC110512633
TU1737603 other downstream 308527 12240234 ~ 12245743 (-) True LOC110512633
TU1737536 other downstream 531830 12020772 ~ 12022440 (-) False G1517822
TU1737778 other upstream 28679 12583728 ~ 12600331 (-) False G1518019
TU1737781 other upstream 28679 12583728 ~ 12600331 (-) False G1518019
TU1737782 other upstream 28679 12583728 ~ 12600331 (-) True G1518019
TU1737893 other upstream 351162 12906211 ~ 12910842 (-) True LOC110495512
TU1737891 other upstream 416604 12971653 ~ 12976441 (-) True LOC110513917

Expression Profile