RNA id: TU1737923


Basic Information

Item Value
RNA id TU1737923
length 565
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1518134
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12881441 ~ 12882005 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAATTTAATTAAAAGGTGGCTGAAGCCAGTAATTGGGGATGATTGTCGGGCATACTGTGCGTAGTGCAAATCAGACATGCTTGCAAAAATGTATGACATCAAAAACATTGTGCTACAGCAAAGCATATAAATAAAGCAAAACCGTACAACCCCACAACGCAGTCTACATTACCACAGTTGGTTAAGAAAGTGGATGACTACAAAAGGGCAGAAGCTACTATGGCAATGGCCATTGCAGAGCATTGTTAGATGCTAGCATGCAACCATTTAGGTATGGCTTGCAAAGCTGCCCAGATTCTGTGGCAGCAACAAACTTCCAAATGCACTGCACCAAGTGCACAGAAATGATTAGGGGAGTACTGGCTCCTTGTTTTCTCAAAAGGGTAACATCAGATGTGGGGGATGAGAAGTTCAATCTCCATTTGGATGAGTCCACTGATGTCAGAGTCTCGAAATACCTGCATGTGGTGATTCAGTATTTCAGTGCTAAAAAAATAACCGTTGGGTCCACATTTCTCAGGCTGGTTGAATTGGAGGGGGGTGATGCCAGATCAATAGTAAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1737871 lncRNA downstream 133525 12747671 ~ 12747916 (-) True G1518095
TU1737858 lncRNA downstream 162015 12719191 ~ 12719426 (-) True G1518082
TU1737852 lncRNA downstream 176174 12704994 ~ 12705267 (-) True G1518076
TU1737817 lncRNA downstream 227688 12651639 ~ 12653753 (-) True G1518044
TU1737764 lncRNA downstream 297797 12571503 ~ 12583644 (-) True LOC118941039
TU1737881 lncRNA upstream 520 12882525 ~ 12885636 (-) True G1518100
TU1737884 lncRNA upstream 16875 12898880 ~ 12900585 (-) False LOC110495512
TU1737928 lncRNA upstream 21826 12903831 ~ 12904177 (-) True G1518139
TU1737932 lncRNA upstream 41072 12923077 ~ 12923360 (-) True G1518143
TU1737934 lncRNA upstream 43519 12925524 ~ 12925894 (-) True G1518145
XM_036951358.1 mRNA downstream 7384 12869440 ~ 12874057 (-) True LOC118941033
XM_036951357.1 mRNA downstream 7385 12869440 ~ 12874056 (-) False LOC118941033
XM_036951351.1 mRNA downstream 16068 12862329 ~ 12865373 (-) True LOC118941031
XM_036951350.1 mRNA downstream 16072 12862329 ~ 12865369 (-) False LOC118941031
XM_036951344.1 mRNA downstream 19230 12857249 ~ 12862211 (-) True LOC110512308
XM_036951329.1 mRNA upstream 16786 12898791 ~ 12908643 (-) False LOC110495512
XM_036951331.1 mRNA upstream 16786 12898791 ~ 12910953 (-) False LOC110495512
XM_036951327.1 mRNA upstream 16786 12898791 ~ 12910954 (-) False LOC110495512
XM_036951328.1 mRNA upstream 16786 12898791 ~ 12910954 (-) False LOC110495512
XM_036951330.1 mRNA upstream 16786 12898791 ~ 12910954 (-) False LOC110495512
TU1737778 other downstream 281110 12583728 ~ 12600331 (-) False G1518019
TU1737781 other downstream 281110 12583728 ~ 12600331 (-) False G1518019
TU1737782 other downstream 281110 12583728 ~ 12600331 (-) True G1518019
TU1737645 other downstream 595809 12285078 ~ 12285632 (-) True G1517902
TU1737633 other downstream 618372 12260792 ~ 12263069 (-) True LOC110495544
TU1737893 other upstream 24206 12906211 ~ 12910842 (-) True LOC110495512
TU1737891 other upstream 89648 12971653 ~ 12976441 (-) True LOC110513917
TU1738554 other upstream 502751 13384756 ~ 13402621 (-) True bcor
TU1738815 other upstream 857446 13739451 ~ 13741567 (-) True G1518858
TU1738967 other upstream 1089076 13971081 ~ 13972289 (-) False G1518991

Expression Profile