RNA id: TU1737881


Basic Information

Item Value
RNA id TU1737881
length 2178
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id G1518100
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12882525 ~ 12885636 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTACATACAAAATATAGCTTTATTTAGACAAATCATCCATCATTTTGTTTACAAAAATATGTACCGTGTCAGCATCAATAGAGAATAGAGGAGCATATAAATACTTATTTCACGTAGAAAATATACAAAGAATGTATTTAAATTCCAGCAAAAATCAGAAGTGATGTTGTAAAACtgaatatattttgttttaaatgCATGTCACATTTAGTTATATTTTGGCATGAtattgaattgaaatgaattaGACCCAAACTGATTAAATGAAGACTAAAAAAGGTTTACTTGTAAAATGAGAAATGGATTTGTAGATGACAAGTGCAATGCTTCATAATCAACACAtaccactaactaactaactaactaactataaCACACAATTTAATTCAACAAGAGCGTCATGTTTTTCCTCTGCTTTAAAGAAAtggttcacccaaattacaactTATTCTAATTTGATGGATACCTACATTAAAAAGGTATTCTATGGAGCTAGCGTCTGCCACCCAGAATGTGGGTTTGTTTACCTTGCTACAGCTTATTGGTGGCATTGTCCAAAAACAATAGAGTGGTAGTACCCTTGTTGGCATACCCCAAATGGCATTACAAACAAAAATCACCTCCATACTACTACAACATATGTAATTTGGTCAAACTACCCTTCAAGCCAGCTTCTGTCTGTACCAAGCATCACACCTCCCCCTCTTGTGGTAAAAATACAACACTGCATATGACTGCTCACATGGGAGAGATGCCATCAATTCTTTCTTATAACTACAAAAGCCAAATGAACTCCCTAACAACGAAGGCAGTCCTTCTTAAAATAATTATATTGCACAACAATAGAGCTTCCTAAAGGGTATAACCCACAATTACACACAGAGATCCATCCCTATAGCCATACATTTCAATTGGAAGCATATGAGAGAAACGCTGAATTCCAAACCATCCCCTTCCCCCACAGACACCTCAGTAGATATTACATTATTTGGAATTCAGCAAATGGCCATTATTGAGCAAATTTAGTTGGGGgaagaaaatttaaaaaaagtctTCATTATTCCAAATATTGGGTCCATCCTCCCCTGCCCTCTAGCTCACTATGAAACACTTAGGATTCCTCCTCATCAAACTGGCTGTGGTGTCCTCCTAAAAGAATCACAAGACAGAAATACAACGGTCAGCTGTTCTGAAGCCACTGTAAACTAAAACAGTGACTCAGTACATTTTTGTCACGTGCACCTAGTGCTATTCATCACTTTCATTCCTGACAATAAACCATATCGACGACACATTGATCAAACTCCATGACATCTGACCAATCAGGCTCTGGTTCAGAGGTGCACTCCACAAAAGTGCATCCTAAGATTATTTGCACGAGGCAGTGAAACCCCTAGTCACTGATCCAGTGTCAgaggctaggggttgtttctggacagggcctcAGAGGCAAGAGAAAAGCATCAATAGCTACTCACTCAGTGGTGTCTCTTGTAGGGTGTAGCCTTGAAGTAGTCTTCTGGTGTGACTGTCTTTACCCCTCCAAAGTAGTCCAGAACCCACACCTTGGTGATGTTCATCTTGGCAAAGAACCAGTTGTGGTCGGTGGGCCAGTCGACCATCTCAGGGTGGCGACTGAACAGGGCTTTCTTGGCAAAGGTGGCCTCTGTACCGTTAATCTGTCAGAAACATACAGCACAGAGCCAGAGAAGATGATGTGGGCACAAAGGGGATCCTGAGGGTCGTATCCTTGGTTCTTACAGAAGTCTGTCTGGGCCAGGGACATGGACAAGGAAGCCTGGGGGTCACCTTTAAATCCTGGACAGAGATCTCCATAGTGGTGAGGTACATGTAGGGCACCCCAGTCCCAGACCCAACTGGTCCGTCACTGGTAGAGAACGCATTGGAGAAGGGTTGTCCTTGCACTGGCTCATGGGTCGATATTGTGGCCATGGAAGCCCAGTTGCACTGGTTGGCGACGAATCTAGCCATCCTGGCGACTTCCTCGTGCGGAGGGATTCTGTAAAGTTCTCCGGGCATAGCGAAAAGCAGTAGAAGCCCTGCTGCCAGCAATGTGTTCATGTTGACTTCCATCTCCTCCATAAACCACTGAGGTATAAGAACGTCGTAAACACAAGTAGAAAGAAAGGAACGAGGAGTGTTTTGTACGCTGCGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1737923 lncRNA downstream 520 12881441 ~ 12882005 (-) True G1518134
TU1737871 lncRNA downstream 134609 12747671 ~ 12747916 (-) True G1518095
TU1737858 lncRNA downstream 163099 12719191 ~ 12719426 (-) True G1518082
TU1737852 lncRNA downstream 177258 12704994 ~ 12705267 (-) True G1518076
TU1737817 lncRNA downstream 228772 12651639 ~ 12653753 (-) True G1518044
TU1737884 lncRNA upstream 13244 12898880 ~ 12900585 (-) False LOC110495512
TU1737928 lncRNA upstream 18195 12903831 ~ 12904177 (-) True G1518139
TU1737932 lncRNA upstream 37441 12923077 ~ 12923360 (-) True G1518143
TU1737934 lncRNA upstream 39888 12925524 ~ 12925894 (-) True G1518145
TU1737938 lncRNA upstream 59426 12945062 ~ 12952820 (-) True G1518149
XM_036951358.1 mRNA downstream 8468 12869440 ~ 12874057 (-) True LOC118941033
XM_036951357.1 mRNA downstream 8469 12869440 ~ 12874056 (-) False LOC118941033
XM_036951351.1 mRNA downstream 17152 12862329 ~ 12865373 (-) True LOC118941031
XM_036951350.1 mRNA downstream 17156 12862329 ~ 12865369 (-) False LOC118941031
XM_036951344.1 mRNA downstream 20314 12857249 ~ 12862211 (-) True LOC110512308
XM_036951329.1 mRNA upstream 13155 12898791 ~ 12908643 (-) False LOC110495512
XM_036951331.1 mRNA upstream 13155 12898791 ~ 12910953 (-) False LOC110495512
XM_036951327.1 mRNA upstream 13155 12898791 ~ 12910954 (-) False LOC110495512
XM_036951328.1 mRNA upstream 13155 12898791 ~ 12910954 (-) False LOC110495512
XM_036951330.1 mRNA upstream 13155 12898791 ~ 12910954 (-) False LOC110495512
TU1737778 other downstream 282194 12583728 ~ 12600331 (-) False G1518019
TU1737781 other downstream 282194 12583728 ~ 12600331 (-) False G1518019
TU1737782 other downstream 282194 12583728 ~ 12600331 (-) True G1518019
TU1737645 other downstream 596893 12285078 ~ 12285632 (-) True G1517902
TU1737633 other downstream 619456 12260792 ~ 12263069 (-) True LOC110495544
TU1737893 other upstream 20575 12906211 ~ 12910842 (-) True LOC110495512
TU1737891 other upstream 86017 12971653 ~ 12976441 (-) True LOC110513917
TU1738554 other upstream 499120 13384756 ~ 13402621 (-) True bcor
TU1738815 other upstream 853815 13739451 ~ 13741567 (-) True G1518858
TU1738967 other upstream 1085445 13971081 ~ 13972289 (-) False G1518991

Expression Profile