RNA id: TU1737955


Basic Information

Item Value
RNA id TU1737955
length 1598
lncRNA type intronic
GC content 0.40
exon number 4
gene id G1518164
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 12986003 ~ 12988589 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGTATATATTGTAGTTACAGTAAGTATTATGATGGGTTGCCTACTGTATATGTTGTAGTTACAGTAAGTATTATGATGGGTTGCCTGCTGTATATATTGTAGTTACAGTAAGTATTATGATGGGTTGCCTACAGTATATGTTGTAGTTACAGTAAGTATTATGATGGGttgcctacagtatatattgtagTTACAGTAAGTATTATGATGGGTTGCCTGCTGTATATATTGTAGTTACAGTAAGTATTATGATGGGTTGCCTATGTTGCAACACTACTACTGAAGTCAGTGATGCttatctggtgaacaggtcacaTGAACAGGGACCTTACTCTGACTGGACCCATCTAATTTGTCTAAGGTATTCTGTATCCTACTCAATTAAGCACTGACCATCTCTAACTAGTGTTATGACTACTGCACCTAATAGTGCTAATGCAGTGGAGGTAAGCTCTCACAGCACAGCCCCTCTATGACCACAGTCATAGCACTAATACAGTGGTAAGCTAGTCGCTTACTGTAGTAAGCTAGTCGTTCATAGTCTAATACATAGCGGAGGTAAGCTCTCAGCTGGTTGTTCATAGTCTAATATGTAGCGGAGGTCAGCTCTCAGCTGGTTGTTCATAGTCTAATATGTAGCGGAGGTCAGCTCTCAGCTGGTTGTTCATAGTCTAATACGTAGCGGAGGTAAGCTCTCAGCTGGTTGTTCATAGTCTAATACATAGCGGAGGTAAGCTCTCAGCTGGTTGTTCATAGTCTAAATGTAGAGGAGCTCTCAGCTGGTTGTTCATAGTCTAATATGTAGTGGAGCTCTCAGCTGGTCGTTCATAGTCTAATACGTTTAGTAATACGTTTAGTAAGATATTgcacacacccacatgcacacacacgtcaCCTACAGACAGCTAATCTCGCTCAGACAATGAGACCCTACCCACAAACACTGGCATATAGCTCTACTGTATTTTGACATCCTAGGAggatggtgggaggagctataggaggatgggctcattgtaatagaGTCAAAGTTCCATGTATTCCATTGCAGCCATTACAATGAAAGGAACTGGAAAGAgggatacatagtcagttgtacaactgaatgcatttaactgaaatgtgtcttccacatttaatccAACCTGACATCCACGTCATCAATGAGACCGTCCTCCTATCGCTCCTCCCACCAGTATATTGACCCTCTGGTTGACACACCAGTATGTATGTTGACTTGGTATATTGACCCACTGGTTGACataccagtatgtacagtatgttgactTGGTATATAGACCCTGTTTTCATCTTGTTCGTTGTTGTCATGAATAACTCATTATATGCCTCAAATTCATACTTAGAAGATAAGTAAgtaagatatttcagtttttaattttttataaattagaaaaaaaatctaaaaagctgtttttcgGTTTctgttgtggggtattgtgaagatttatatttatttaattattttagaataaggctataacataacaaaatgtggaaaaaggggaaggggtctgaatactttctgaatgcactgttcgTGTGCCTCAAACACTGCGAAGCGCCTATGAATAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1737938 lncRNA downstream 33183 12945062 ~ 12952820 (-) True G1518149
TU1737934 lncRNA downstream 60109 12925524 ~ 12925894 (-) True G1518145
TU1737932 lncRNA downstream 62643 12923077 ~ 12923360 (-) True G1518143
TU1737928 lncRNA downstream 81826 12903831 ~ 12904177 (-) True G1518139
TU1737884 lncRNA downstream 85418 12898880 ~ 12900585 (-) False LOC110495512
TU1737963 lncRNA upstream 54654 13043243 ~ 13043505 (-) True G1518171
TU1737964 lncRNA upstream 55310 13043899 ~ 13047108 (-) True G1518172
TU1737966 lncRNA upstream 60242 13048831 ~ 13049195 (-) True G1518174
TU1737968 lncRNA upstream 64008 13052597 ~ 13052796 (-) True G1518176
TU1737970 lncRNA upstream 65138 13053727 ~ 13054035 (-) True G1518178
XM_036951307.1 mRNA downstream 63273 12912019 ~ 12922730 (-) True LOC110519411
XM_036951308.1 mRNA downstream 63296 12912019 ~ 12922707 (-) False LOC110519411
XM_036951327.1 mRNA downstream 75049 12898791 ~ 12910954 (-) False LOC110495512
XM_021570798.2 mRNA upstream 93230 13081819 ~ 13084730 (-) False LOC110495504
XR_005037323.1 mRNA upstream 93230 13081819 ~ 13084730 (-) True LOC110495504
XM_036951319.1 mRNA upstream 96254 13084843 ~ 13101674 (-) False LOC110495506
XM_036951320.1 mRNA upstream 96787 13085376 ~ 13101678 (-) True LOC110495506
XM_036951880.1 mRNA upstream 324039 13312628 ~ 13402659 (-) False bcor
TU1737891 other downstream 9562 12971653 ~ 12976441 (-) True LOC110513917
TU1737893 other downstream 75161 12906211 ~ 12910842 (-) True LOC110495512
TU1737778 other downstream 385672 12583728 ~ 12600331 (-) False G1518019
TU1737781 other downstream 385672 12583728 ~ 12600331 (-) False G1518019
TU1737782 other downstream 385672 12583728 ~ 12600331 (-) True G1518019
TU1738554 other upstream 396167 13384756 ~ 13402621 (-) True bcor
TU1738815 other upstream 750862 13739451 ~ 13741567 (-) True G1518858
TU1738967 other upstream 982492 13971081 ~ 13972289 (-) False G1518991
TU1739561 other upstream 1496090 14484679 ~ 14486096 (-) True G1519529
TU1739599 other upstream 1517811 14506400 ~ 14507318 (-) True LOC110495482

Expression Profile