RNA id: TU1737964


Basic Information

Item Value
RNA id TU1737964
length 241
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G1518172
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13043899 ~ 13047108 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagaagcggaccaaagcgcagcgtggtggttattcatgttttaataaatccctacacatgaacaaactaacaaaaacaagaaatgtgcaaacgcaaaacagtcctatcctgtgacaacaaacacagtgacaggaacaatcacccaccaacacacagtgaaacccaggctacctaagtatgattctcaatcagagacaactaatgacacctgcctctgattgagaaccatactaggccgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1737963 lncRNA downstream 394 13043243 ~ 13043505 (-) True G1518171
TU1737955 lncRNA downstream 55310 12986003 ~ 12988589 (-) True G1518164
TU1737938 lncRNA downstream 91079 12945062 ~ 12952820 (-) True G1518149
TU1737934 lncRNA downstream 118005 12925524 ~ 12925894 (-) True G1518145
TU1737932 lncRNA downstream 120539 12923077 ~ 12923360 (-) True G1518143
TU1737966 lncRNA upstream 1723 13048831 ~ 13049195 (-) True G1518174
TU1737968 lncRNA upstream 5489 13052597 ~ 13052796 (-) True G1518176
TU1737970 lncRNA upstream 6619 13053727 ~ 13054035 (-) True G1518178
TU1738018 lncRNA upstream 105918 13153026 ~ 13153398 (-) True G1518216
TU1738019 lncRNA upstream 110630 13157738 ~ 13158042 (-) True G1518217
XM_036951305.1 mRNA downstream 12578 12933662 ~ 13031321 (-) False LOC110513917
XM_036951303.1 mRNA downstream 13548 12933662 ~ 13030351 (-) False LOC110513917
XM_036951304.1 mRNA downstream 13548 12933662 ~ 13030351 (-) False LOC110513917
XM_036951307.1 mRNA downstream 121169 12912019 ~ 12922730 (-) True LOC110519411
XM_036951308.1 mRNA downstream 121192 12912019 ~ 12922707 (-) False LOC110519411
XM_021570798.2 mRNA upstream 34711 13081819 ~ 13084730 (-) False LOC110495504
XR_005037323.1 mRNA upstream 34711 13081819 ~ 13084730 (-) True LOC110495504
XM_036951319.1 mRNA upstream 37735 13084843 ~ 13101674 (-) False LOC110495506
XM_036951320.1 mRNA upstream 38268 13085376 ~ 13101678 (-) True LOC110495506
XM_036951880.1 mRNA upstream 265520 13312628 ~ 13402659 (-) False bcor
TU1737891 other downstream 67458 12971653 ~ 12976441 (-) True LOC110513917
TU1737893 other downstream 133057 12906211 ~ 12910842 (-) True LOC110495512
TU1737778 other downstream 443568 12583728 ~ 12600331 (-) False G1518019
TU1738554 other upstream 337648 13384756 ~ 13402621 (-) True bcor
TU1738815 other upstream 692343 13739451 ~ 13741567 (-) True G1518858
TU1738967 other upstream 923973 13971081 ~ 13972289 (-) False G1518991
TU1739561 other upstream 1437571 14484679 ~ 14486096 (-) True G1519529
TU1739599 other upstream 1459292 14506400 ~ 14507318 (-) True LOC110495482

Expression Profile