RNA id: TCONS_00049072


Basic Information

Item Value
RNA id TCONS_00049072
length 971
lncRNA type read_through
GC content 0.44
exon number 5
gene id XLOC_024390
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 2275525 ~ 2299749 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCTCCAAATGTcggaaatatttatcatttctaagCATGGTCTTTCAGACCGAAGACGTCCGCCATCTTggataaacagaaaacaaaaacaatacgAGTTTCTCAAGATGATACAACATATCACATCCTTTACTCTAAATGACAACGATTCTTACTGCAATGAAGAACTTGGATAAACTTGTAAAGCCACAGTCTTTACCTCACTACTTCCTCAATTCACCAGAACACTGTCAGTTTAGCATCTCGAATGAAGACGTGACTTTCGTGCACTCTTTTCAGCCTGAATCCTGTTCACTTCTGCCCAGCCTTACCAGCCGCCTGAGACGCCCAaacaaaatatatagaaaaatcaGCCACCAGGCACTGAGGTCATCGAAGCGACGACAATGACGACATCTTCAGGCCTGTCGGGAAACATTACAGAGAATTAATGGTGTTAAATCACAAACTGAGCCACTTGAGGATGTGGAAGTTCTTCTTGCCGACACGGATCAGACTGAGTCCGTTTGAGAGGATTTGCTGACCAACAATAAGCACTTGCTCTGGGTTTTCGGCCCTCTGGTGGTTTATCCAGACACCGCCGTCCTTGATCATCTGATAGCTGTGCACAACAGGAcaataaattcattatttttgGCGAAAAAGGCACAGatggaatgcaaaaaaataaataaataaataaagtgcagAATCTGATGGATCATTCCACAAGCACGCACCCGCGGGGTCCGTCAGGAATAGCTCGTGCTCGTCTGCAGGCGTCCAGAACCGTCGTTCCTGGTTCAAGGAAAAACTCATGGAATGGAGCCTCTCGGAAAATCTCCTGCAgttcagtgtcactcatctgctCCAGAGCCTCAATACTGCTGTGATATAGAGCTGTCgtgcacctacacacacacatatacatatataatacaggggggctaataattctgactttaactgtgtgtgtgtgtgtgtatgtatat

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0048762 mesenchymal cell differentiation biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0043009 chordate embryonic development biological_process
GO:0071599 otic vesicle development biological_process
GO:0016477 cell migration biological_process
GO:0035295 tube development biological_process
GO:0090596 sensory organ morphogenesis biological_process
GO:0001501 skeletal system development biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0048592 eye morphogenesis biological_process
GO:0048593 camera-type eye morphogenesis biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0060485 mesenchyme development biological_process
GO:0008283 cell population proliferation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0030855 epithelial cell differentiation biological_process
GO:0061053 somite development biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0007399 nervous system development biological_process
GO:0032502 developmental process biological_process
GO:0007420 brain development biological_process
GO:0048384 retinoic acid receptor signaling pathway biological_process
GO:0048385 regulation of retinoic acid receptor signaling pathway biological_process
GO:0030902 hindbrain development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049308 lncRNA downstream 110491 2126816 ~ 2165034 (-) True XLOC_024389
TCONS_00049307 lncRNA downstream 113503 2126816 ~ 2162022 (-) False XLOC_024389
TCONS_00048221 lncRNA downstream 144064 2126816 ~ 2131461 (-) False XLOC_024389
TCONS_00048222 lncRNA downstream 144075 2126816 ~ 2131450 (-) False XLOC_024389
TCONS_00048220 lncRNA downstream 262134 2012677 ~ 2013391 (-) True XLOC_024388
TCONS_00049309 lncRNA upstream 9729 2309414 ~ 2312015 (-) False XLOC_024391
TCONS_00049310 lncRNA upstream 9729 2309414 ~ 2312175 (-) False XLOC_024391
TCONS_00049311 lncRNA upstream 9729 2309414 ~ 2313033 (-) True XLOC_024391
TCONS_00049313 lncRNA upstream 183427 2483112 ~ 2485047 (-) False XLOC_024393
TCONS_00049312 lncRNA upstream 183427 2483112 ~ 2485047 (-) False XLOC_024393
TCONS_00048218 mRNA downstream 194154 2002715 ~ 2081371 (-) False XLOC_024387
TCONS_00048219 mRNA downstream 194154 2003183 ~ 2081371 (-) True XLOC_024387
TCONS_00048216 mRNA downstream 554789 1695547 ~ 1720736 (-) True XLOC_024384
TCONS_00048213 mRNA downstream 588044 1631828 ~ 1687481 (-) False XLOC_024383
TCONS_00048224 mRNA upstream 33573 2333258 ~ 2355107 (-) True XLOC_024392
TCONS_00048233 mRNA upstream 407037 2706722 ~ 2723902 (-) False XLOC_024396
TCONS_00048234 mRNA upstream 407041 2706726 ~ 2723682 (-) False XLOC_024396
TCONS_00048235 mRNA upstream 408529 2708214 ~ 2724033 (-) True XLOC_024396
TCONS_00048236 mRNA upstream 715991 3015676 ~ 3034668 (-) False XLOC_024397
TCONS_00048212 other downstream 645776 1629655 ~ 1629749 (-) True XLOC_024382
TCONS_00048188 other downstream 1784740 488821 ~ 490785 (-) True XLOC_024368
TCONS_00048237 other upstream 716485 3016170 ~ 3034668 (-) False XLOC_024397
TCONS_00048288 other upstream 2025931 4325616 ~ 4325731 (-) True XLOC_024429
TCONS_00048296 other upstream 2591082 4890767 ~ 4904432 (-) True XLOC_024434
TCONS_00048299 other upstream 3041277 5340962 ~ 5341102 (-) True XLOC_024438
TCONS_00048304 other upstream 3628486 5928171 ~ 5928286 (-) True XLOC_024444

Expression Profile

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