RNA id: TU1738818


Basic Information

Item Value
RNA id TU1738818
length 444
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G1518861
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13718110 ~ 13720169 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcctgagaggatggaagttcaatatgtagctacaGTAACATTAGATGTAACGTTAGAAGGCTAATGTTGCCTCGAATTGAAGTTAGGCTAGCGAACAAGCATTTTagtcaggtagcctaggacaacaaacaAATAAAGGCGTGTACTGCTGTATGCCAGAGTGATAGACCGTGTcctcaacatgaaagagaggaggatggcattggcgtttctctacaagtaggTCTCTTTTCCATAGGGGGATCTCAGCACATCCTCTGCCATTCCAACCACCATTGACAAAACTACCCCAACTACTACTGCCCCTTTAACGCCTGATTCTCCAGCTACTGACTCTCCAACTACTGGTTACCTAAATACTACTGGACTTCCAACTACTGGTTACCCTACCTCTATCCCTATCACTAGTATCATTCTCCCCTctcccaccacctccaccaccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1738803 lncRNA downstream 53389 13664465 ~ 13664721 (-) True G1518850
TU1738740 lncRNA downstream 131580 13586214 ~ 13586530 (-) True G1518797
TU1738727 lncRNA downstream 152098 13565782 ~ 13566012 (-) True G1518784
TU1738726 lncRNA downstream 153330 13564558 ~ 13564780 (-) True G1518783
TU1738715 lncRNA downstream 165986 13545769 ~ 13552124 (-) True G1518772
TU1738921 lncRNA upstream 173203 13893372 ~ 13893872 (-) True G1518953
TU1738971 lncRNA upstream 249753 13969922 ~ 13970867 (-) False G1518992
TU1738970 lncRNA upstream 250244 13970413 ~ 13970867 (-) True G1518992
TU1738968 lncRNA upstream 251414 13971583 ~ 13972538 (-) True G1518991
TU1738973 lncRNA upstream 253149 13973318 ~ 13973544 (-) True G1518994
XM_036951889.1 mRNA downstream 6166 13707394 ~ 13711944 (-) True LOC110497005
XM_021570770.2 mRNA downstream 18480 13685206 ~ 13699630 (-) True LOC110495493
XR_002469429.2 mRNA downstream 248040 13465904 ~ 13470070 (-) True LOC110495499
NM_001124414.1 mRNA downstream 279046 13421382 ~ 13439064 (-) True cd80
XR_005037377.1 mRNA downstream 308643 13406414 ~ 13409467 (-) False LOC110495500
XM_036951412.1 mRNA upstream 10191 13730360 ~ 13778831 (-) True LOC110495492
XM_021570767.2 mRNA upstream 75240 13795409 ~ 13799998 (-) False LOC110495490
XM_021570766.2 mRNA upstream 75240 13795409 ~ 13800006 (-) True LOC110495490
XM_036951891.1 mRNA upstream 83212 13803381 ~ 13816934 (-) False LOC110495489
XM_021570765.2 mRNA upstream 83212 13803381 ~ 13833406 (-) True LOC110495489
TU1738554 other downstream 315489 13384756 ~ 13402621 (-) True bcor
TU1737891 other downstream 741669 12971653 ~ 12976441 (-) True LOC110513917
TU1737893 other downstream 807268 12906211 ~ 12910842 (-) True LOC110495512
TU1737781 other downstream 1117779 12583728 ~ 12600331 (-) False G1518019
TU1738815 other upstream 19282 13739451 ~ 13741567 (-) True G1518858
TU1738967 other upstream 250912 13971081 ~ 13972289 (-) False G1518991
TU1739561 other upstream 764510 14484679 ~ 14486096 (-) True G1519529
TU1739599 other upstream 786231 14506400 ~ 14507318 (-) True LOC110495482
TU1740147 other upstream 860800 14580969 ~ 14587559 (-) False LOC110495477

Expression Profile