RNA id: TU1738971


Basic Information

Item Value
RNA id TU1738971
length 946
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1518992
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13969922 ~ 13970867 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcattttacctCTACCGgaaacacctgtatatagccttgctactgttattttattgttgctccataattatttgttatatttctatatttctttcttaaaacggcattgttggttaagggcttgtaagtaagcatttcactgtaagatctacctacacctgttgtattcggcacatgtaataaatacaatttgatttgattttgtttctAATGATGTTCTACTCAGTATGCTCTTTAAACTCAATTCCTCTACCCCCTTCTCCCTCACACTGgatctctatttccctctcatACTGCCCACACTATCAGTACATGCTCCACTATCTCTGTTTCCTGGCAGTAATCACACCTTCCTGTGGTTGGTGACTAGAGGGAGCAGGTTAGCAGAGCATTTgagctaaacctaacccttttcctaaccttaatctAAGTCTTccaacctgccacgttaattatcctaacctgctgcgtaaactatcctaacctgctacgttaattatcctaacctccTGGgtaaattatcctaacctgctacgttaattatcctaacctccTGGgtaaattatcctaacctgctacgttaattatcctaacctgctgggtAAATTATCCTAACATGccacattaattatcctaacctgctgggtaaattatcctaacctgctacgttaattatcctaacctccTGGgtaaattatcctaacctgctacgttaattatcctaacctgctgggtaaattatcctaacctgctacattaattatcctaacctccTGGgtaaattatcctaacctgctatgttaattatcctaacctgctgggtaaattatcctaacctgctacgttaattgtCCTAACCTGCTGGgtaaattatcctaacctgctgggtAAATTGTCCTAACCTGCCGGGTAAATTGTCCTAACTTGCCGGGTAAACCCATTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1738921 lncRNA downstream 76050 13893372 ~ 13893872 (-) True G1518953
TU1738818 lncRNA downstream 249753 13718110 ~ 13720169 (-) True G1518861
TU1738803 lncRNA downstream 305201 13664465 ~ 13664721 (-) True G1518850
TU1738740 lncRNA downstream 383392 13586214 ~ 13586530 (-) True G1518797
TU1738727 lncRNA downstream 403910 13565782 ~ 13566012 (-) True G1518784
TU1738968 lncRNA upstream 716 13971583 ~ 13972538 (-) True G1518991
TU1738973 lncRNA upstream 2451 13973318 ~ 13973544 (-) True G1518994
TU1739376 lncRNA upstream 189413 14160280 ~ 14160701 (-) True G1519364
TU1739384 lncRNA upstream 197692 14168559 ~ 14168901 (-) True G1519372
TU1739394 lncRNA upstream 213346 14184213 ~ 14184440 (-) True G1519382
XM_021570762.2 mRNA downstream 95360 13865384 ~ 13874562 (-) True LOC110495488
XM_021570765.2 mRNA downstream 136516 13803381 ~ 13833406 (-) True LOC110495489
XM_036951891.1 mRNA downstream 152988 13803381 ~ 13816934 (-) False LOC110495489
XM_021570766.2 mRNA downstream 169916 13795409 ~ 13800006 (-) True LOC110495490
XM_021570767.2 mRNA downstream 169924 13795409 ~ 13799998 (-) False LOC110495490
XM_021570755.2 mRNA upstream 535360 14506227 ~ 14507592 (-) False LOC110495482
XM_036951907.1 mRNA upstream 559714 14530581 ~ 14578086 (-) False LOC110495480
XM_036951908.1 mRNA upstream 559714 14530581 ~ 14578086 (-) False LOC110495480
XM_036951910.1 mRNA upstream 559714 14530581 ~ 14578086 (-) False LOC110495480
XM_036951911.1 mRNA upstream 559714 14530581 ~ 14578086 (-) False LOC110495480
TU1738815 other downstream 228355 13739451 ~ 13741567 (-) True G1518858
TU1738554 other downstream 567301 13384756 ~ 13402621 (-) True bcor
TU1737891 other downstream 993481 12971653 ~ 12976441 (-) True LOC110513917
TU1737893 other downstream 1059080 12906211 ~ 12910842 (-) True LOC110495512
TU1737782 other downstream 1369591 12583728 ~ 12600331 (-) True G1518019
TU1738967 other upstream 214 13971081 ~ 13972289 (-) False G1518991
TU1739561 other upstream 513812 14484679 ~ 14486096 (-) True G1519529
TU1739599 other upstream 535533 14506400 ~ 14507318 (-) True LOC110495482
TU1740147 other upstream 610102 14580969 ~ 14587559 (-) False LOC110495477
TU1740149 other upstream 610102 14580969 ~ 14587559 (-) True LOC110495477

Expression Profile