RNA id: TU1738973


Basic Information

Item Value
RNA id TU1738973
length 227
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G1518994
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13973318 ~ 13973544 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttgtctcatcacgcaccagcgactcctgtggcgggccgggcgcagtgcgcgctaaccaaggttgccaggtgcacggtgtttcctccgacacattggtgcggctggcttcctggttggatggcgctgtgttaagaagcagtgcggcttggttgggttgtgtaccggaggacgcatgactttcaaccttggtctctcccgagcccgtacgggagttgtagcgatgaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1738968 lncRNA downstream 780 13971583 ~ 13972538 (-) True G1518991
TU1738971 lncRNA downstream 2451 13969922 ~ 13970867 (-) False G1518992
TU1738970 lncRNA downstream 2451 13970413 ~ 13970867 (-) True G1518992
TU1738921 lncRNA downstream 79446 13893372 ~ 13893872 (-) True G1518953
TU1738818 lncRNA downstream 253149 13718110 ~ 13720169 (-) True G1518861
TU1739376 lncRNA upstream 186736 14160280 ~ 14160701 (-) True G1519364
TU1739384 lncRNA upstream 195015 14168559 ~ 14168901 (-) True G1519372
TU1739394 lncRNA upstream 210669 14184213 ~ 14184440 (-) True G1519382
TU1739395 lncRNA upstream 210939 14184483 ~ 14184728 (-) True G1519383
TU1739397 lncRNA upstream 214713 14188257 ~ 14188758 (-) True G1519385
XM_021570762.2 mRNA downstream 98756 13865384 ~ 13874562 (-) True LOC110495488
XM_021570765.2 mRNA downstream 139912 13803381 ~ 13833406 (-) True LOC110495489
XM_036951891.1 mRNA downstream 156384 13803381 ~ 13816934 (-) False LOC110495489
XM_021570766.2 mRNA downstream 173312 13795409 ~ 13800006 (-) True LOC110495490
XM_021570767.2 mRNA downstream 173320 13795409 ~ 13799998 (-) False LOC110495490
XM_021570755.2 mRNA upstream 532683 14506227 ~ 14507592 (-) False LOC110495482
XM_036951907.1 mRNA upstream 557037 14530581 ~ 14578086 (-) False LOC110495480
XM_036951908.1 mRNA upstream 557037 14530581 ~ 14578086 (-) False LOC110495480
XM_036951910.1 mRNA upstream 557037 14530581 ~ 14578086 (-) False LOC110495480
XM_036951911.1 mRNA upstream 557037 14530581 ~ 14578086 (-) False LOC110495480
TU1738967 other downstream 1029 13971081 ~ 13972289 (-) False G1518991
TU1738815 other downstream 231751 13739451 ~ 13741567 (-) True G1518858
TU1738554 other downstream 570697 13384756 ~ 13402621 (-) True bcor
TU1737891 other downstream 996877 12971653 ~ 12976441 (-) True LOC110513917
TU1737893 other downstream 1062476 12906211 ~ 12910842 (-) True LOC110495512
TU1739561 other upstream 511135 14484679 ~ 14486096 (-) True G1519529
TU1739599 other upstream 532856 14506400 ~ 14507318 (-) True LOC110495482
TU1740147 other upstream 607425 14580969 ~ 14587559 (-) False LOC110495477
TU1740149 other upstream 607425 14580969 ~ 14587559 (-) True LOC110495477
TU1740584 other upstream 1302519 15276063 ~ 15277021 (-) True G1520339

Expression Profile