RNA id: TCONS_00049313


Basic Information

Item Value
RNA id TCONS_00049313
length 1122
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id XLOC_024393
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 2483112 ~ 2485048 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAAGGTTGTGTTTTGGCCTCTAGGTTGTGTTTTTTGTTCTGTAAGTTGTGGTTTTGGCCTGTAGGCGGTTTTTGTCCTGTAGGTTGTGTGTTTTGTACTGTAGGTTGTGGTTTTGGCCTGTAGGCTGTTTTTTTGTCCTGTAGGTTGTTTTTTTGGCCTGTAGGATGTGTTATTGACCTGTATGGTGTGTTTTTTGGCCTGTAGGTTGTGGTTTTGGCCTGTAGGCTGTTTTTTTGTCCTGTAGGTTGTGTTTTTTTGGCCTGTAGGATGTGCTATTGACCTGTATGGTGTGTTTTTTGGCCTGTAGGCTGTTTTTTGTCCTGTAGGTTGTGGTTTTGTGCCTGTAGGTTGTGGTTTTGGACCTGTGGGTTGTGGTTTTTGGCCTGTAGGTTGTGGTTTTGGTCTGTAGGCTGTTTTTGTTCTATAGGTTGTGTGTTTTTGGCTTGTAGgttgtggggttttttttttggCCTGTAGTTTTTGGTTTTTGTTCTGTATGTTGTGTTTTTGGCCTGTAGGCTGtttttttgttctgtagattgtgGCTTTTGGCCTGTAGGCTGTTCTCTAGCATGTGGGTTGTGGTTTTTGGCCTGTGGGTTGTTCTCCAGCCTGAAGGCTGTGGCTTTTGGCCTGTAGGTTGTTCTCTAGCCTGTGGGTTGTGGTTTTGGGCCTATCGGTTGTGGTTTATGTTCTGTAGGTTGTGGTTTTGTGCCTGTGGGTTGGTCTCCAGTCTATAGGTTGTGGTTTTGGACCTGTGGGTTGTGGCTTTGGCCTGTATATTTTTCTCCAGCCTGTGGGTTGTGGTTTGGCTTGTAGGTTGTGTTTTTTGGCCGGTAGGCTGTGGCTTTGGCCTGTAGTTTGTGGTTTTGTGCCTGTAGTTTGTGGTTTTGGACCTGTGGGTTGTGGTTTTTGGCCTGTAGGTTGTGGTCCAGCCTGTGGGTTGTGACTGTAGGAGCCGTTGTGGCTCTGTTGCGTCTGCCATCTGCAATCAGCACAGTGGGTTTCAGTCTTTCACCAGTCTGTAGATGTGATGTTGGGCTCCATGTTCACTGGTGGACACTTCAAACACGTAAGCGATGCATAGTAAGGTTTCTAGAGTGTCTCTGTTGGTTATAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049311 lncRNA downstream 170079 2309414 ~ 2313033 (-) True XLOC_024391
TCONS_00049310 lncRNA downstream 170937 2309414 ~ 2312175 (-) False XLOC_024391
TCONS_00049309 lncRNA downstream 171097 2309414 ~ 2312015 (-) False XLOC_024391
TCONS_00049073 lncRNA downstream 183363 2275525 ~ 2299749 (-) False XLOC_024390
TCONS_00049072 lncRNA downstream 183427 2275525 ~ 2299685 (-) False XLOC_024390
TCONS_00048227 lncRNA upstream 61296 2546343 ~ 2576487 (-) False XLOC_024394
TCONS_00048226 lncRNA upstream 61296 2546343 ~ 2576487 (-) False XLOC_024394
TCONS_00048225 lncRNA upstream 61296 2546343 ~ 2576487 (-) False XLOC_024394
TCONS_00048228 lncRNA upstream 84624 2569671 ~ 2575810 (-) False XLOC_024394
TCONS_00048229 lncRNA upstream 84624 2569671 ~ 2582522 (-) False XLOC_024394
TCONS_00048224 mRNA downstream 128005 2333258 ~ 2355107 (-) True XLOC_024392
TCONS_00048218 mRNA downstream 401741 2002715 ~ 2081371 (-) False XLOC_024387
TCONS_00048219 mRNA downstream 401741 2003183 ~ 2081371 (-) True XLOC_024387
TCONS_00048216 mRNA downstream 762376 1695547 ~ 1720736 (-) True XLOC_024384
TCONS_00048213 mRNA downstream 795631 1631828 ~ 1687481 (-) False XLOC_024383
TCONS_00048233 mRNA upstream 221675 2706722 ~ 2723902 (-) False XLOC_024396
TCONS_00048234 mRNA upstream 221679 2706726 ~ 2723682 (-) False XLOC_024396
TCONS_00048235 mRNA upstream 223167 2708214 ~ 2724033 (-) True XLOC_024396
TCONS_00048236 mRNA upstream 530629 3015676 ~ 3034668 (-) False XLOC_024397
TCONS_00048240 mRNA upstream 562082 3047129 ~ 3058687 (-) False XLOC_024398
TCONS_00048212 other downstream 853363 1629655 ~ 1629749 (-) True XLOC_024382
TCONS_00048188 other downstream 1992327 488821 ~ 490785 (-) True XLOC_024368
TCONS_00048237 other upstream 531123 3016170 ~ 3034668 (-) False XLOC_024397
TCONS_00048288 other upstream 1840569 4325616 ~ 4325731 (-) True XLOC_024429
TCONS_00048296 other upstream 2405720 4890767 ~ 4904432 (-) True XLOC_024434
TCONS_00048299 other upstream 2855915 5340962 ~ 5341102 (-) True XLOC_024438
TCONS_00048304 other upstream 3443124 5928171 ~ 5928286 (-) True XLOC_024444

Expression Profile

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