RNA id: TU1739552


Basic Information

Item Value
RNA id TU1739552
length 1266
lncRNA type intronic
GC content 0.38
exon number 5
gene id G1519521
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14465372 ~ 14469636 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaggatattagtaacacacagaccagcctattactacactatagaggatattagtaacacacagaccagtctattactacactatagaggatattagtaacacacagaccagtctattactacactatagaggatacagaccagtccgttactacactatagaggatattagtaacacacagaccagtctattactacactatagaggatacagaccagtccattactatactatagaggatattagtaacacacagaccagtctattactacactatagaggatacagaccagtctattactacactatagaggatacagaccagtccattactacactatagaggatacagaccaggccattactacactatagaggatattagtaacatacagaccagtccattactacactatagaggatacagaccagtccattactacactatagaggatattagtaacacacagaccagtctattactacactatagaggatattactaacatacagaccagtccattactacactatagcggatacagaccagtccattactacactatagaggatacagaccagtccattactacactatagaggatattagtaacacacagaccagtctattactactctatagaggatacagaccagtctattactgcaCTATAGAGAGTAgtagtaacacacagaccagtctattactacactataggggatacagaccagtccatgactacactatagaggatattagttacacacagaccagtctattactacactatagaggatattagtaacacacagaccagtccattactacactatagaggacacagaccagtctattactacactatagatgaTATTAGTTACACacagaccagtccattactacactatagaggatattagtaacacacagaccagtctattactacactatagaggacacagaccagtctattactacactatagaggatattagtaacacacagatcagtctattactacactatagaggatattagtaacacacagaccagtctattactacactatagaggacacaaaccagtctattactacactatagaggatattaaccagtccattactacactatagaggatacagaccagtccattactacactatagaggatacagaccagtctattagtACACAATAGAGGATGCAGACCAGTCCATTACTtcactatagaggatattagtaacacacagaccagtctattac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1739541 lncRNA downstream 11941 14453073 ~ 14453431 (-) True G1519514
TU1739538 lncRNA downstream 29837 14433556 ~ 14435535 (-) True G1519511
TU1739537 lncRNA downstream 31872 14433209 ~ 14433500 (-) True G1519510
TU1739536 lncRNA downstream 32583 14432577 ~ 14432789 (-) True G1519509
TU1739534 lncRNA downstream 37827 14427329 ~ 14427545 (-) True G1519507
TU1739556 lncRNA upstream 8986 14478622 ~ 14479024 (-) True G1519524
TU1739562 lncRNA upstream 17077 14486713 ~ 14489248 (-) True G1519530
TU1739563 lncRNA upstream 19742 14489378 ~ 14489595 (-) True G1519531
TU1739564 lncRNA upstream 20060 14489696 ~ 14492115 (-) False G1519532
TU1739566 lncRNA upstream 20060 14489696 ~ 14492566 (-) False G1519532
XM_021570762.2 mRNA downstream 590810 13865384 ~ 13874562 (-) True LOC110495488
XM_021570765.2 mRNA downstream 631966 13803381 ~ 13833406 (-) True LOC110495489
XM_036951891.1 mRNA downstream 648438 13803381 ~ 13816934 (-) False LOC110495489
XM_021570766.2 mRNA downstream 665366 13795409 ~ 13800006 (-) True LOC110495490
XM_021570767.2 mRNA downstream 665374 13795409 ~ 13799998 (-) False LOC110495490
XM_021570755.2 mRNA upstream 36591 14506227 ~ 14507592 (-) False LOC110495482
XM_036951907.1 mRNA upstream 60945 14530581 ~ 14578086 (-) False LOC110495480
XM_036951908.1 mRNA upstream 60945 14530581 ~ 14578086 (-) False LOC110495480
XM_036951910.1 mRNA upstream 60945 14530581 ~ 14578086 (-) False LOC110495480
XM_036951911.1 mRNA upstream 60945 14530581 ~ 14578086 (-) False LOC110495480
TU1738967 other downstream 493083 13971081 ~ 13972289 (-) False G1518991
TU1738815 other downstream 723805 13739451 ~ 13741567 (-) True G1518858
TU1738554 other downstream 1062751 13384756 ~ 13402621 (-) True bcor
TU1737891 other downstream 1488931 12971653 ~ 12976441 (-) True LOC110513917
TU1737893 other downstream 1554530 12906211 ~ 12910842 (-) True LOC110495512
TU1739561 other upstream 15043 14484679 ~ 14486096 (-) True G1519529
TU1739599 other upstream 36764 14506400 ~ 14507318 (-) True LOC110495482
TU1740147 other upstream 111333 14580969 ~ 14587559 (-) False LOC110495477
TU1740149 other upstream 111333 14580969 ~ 14587559 (-) True LOC110495477
TU1740584 other upstream 806427 15276063 ~ 15277021 (-) True G1520339

Expression Profile