RNA id: TU1739570


Basic Information

Item Value
RNA id TU1739570
length 232
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G1519535
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14495694 ~ 14495925 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagagagagagagagagacagagatggacaggAGTGGCAGAAGACAAACAGTTATTTCTTCAAGGATGTTTGGCTGGTTTCACCGCAAGGCCAGGTGATGTGAGGTCTTACAAGTGGAGCGTTCTTGGGTGCATTGACTCACCTGATTTATGCTGATTCGCCGACGGACCGACGGGTCCCTGGCTGATTCAGTGAGTCGCTGGGCAGAATGAGGAGTCGTATTGATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1739566 lncRNA downstream 3128 14489696 ~ 14492566 (-) False G1519532
TU1739564 lncRNA downstream 3579 14489696 ~ 14492115 (-) False G1519532
TU1739565 lncRNA downstream 3579 14489745 ~ 14492115 (-) True G1519532
TU1739563 lncRNA downstream 6099 14489378 ~ 14489595 (-) True G1519531
TU1739562 lncRNA downstream 6446 14486713 ~ 14489248 (-) True G1519530
TU1739614 lncRNA upstream 19385 14515310 ~ 14515523 (-) True G1519570
TU1739619 lncRNA upstream 29456 14525381 ~ 14525666 (-) True G1519574
TU1739621 lncRNA upstream 31050 14526975 ~ 14527514 (-) False G1519575
TU1739624 lncRNA upstream 31050 14526975 ~ 14527207 (-) True G1519575
TU1740172 lncRNA upstream 40192 14536117 ~ 14536640 (-) True G1519987
XM_021570762.2 mRNA downstream 621132 13865384 ~ 13874562 (-) True LOC110495488
XM_021570765.2 mRNA downstream 662288 13803381 ~ 13833406 (-) True LOC110495489
XM_036951891.1 mRNA downstream 678760 13803381 ~ 13816934 (-) False LOC110495489
XM_021570766.2 mRNA downstream 695688 13795409 ~ 13800006 (-) True LOC110495490
XM_021570767.2 mRNA downstream 695696 13795409 ~ 13799998 (-) False LOC110495490
XM_021570755.2 mRNA upstream 10302 14506227 ~ 14507592 (-) False LOC110495482
XM_036951907.1 mRNA upstream 34656 14530581 ~ 14578086 (-) False LOC110495480
XM_036951908.1 mRNA upstream 34656 14530581 ~ 14578086 (-) False LOC110495480
XM_036951910.1 mRNA upstream 34656 14530581 ~ 14578086 (-) False LOC110495480
XM_036951911.1 mRNA upstream 34656 14530581 ~ 14578086 (-) False LOC110495480
TU1739561 other downstream 9598 14484679 ~ 14486096 (-) True G1519529
TU1738967 other downstream 523405 13971081 ~ 13972289 (-) False G1518991
TU1738815 other downstream 754127 13739451 ~ 13741567 (-) True G1518858
TU1738554 other downstream 1093073 13384756 ~ 13402621 (-) True bcor
TU1737891 other downstream 1519253 12971653 ~ 12976441 (-) True LOC110513917
TU1739599 other upstream 10475 14506400 ~ 14507318 (-) True LOC110495482
TU1740147 other upstream 85044 14580969 ~ 14587559 (-) False LOC110495477
TU1740149 other upstream 85044 14580969 ~ 14587559 (-) True LOC110495477
TU1740584 other upstream 780138 15276063 ~ 15277021 (-) True G1520339
TU1740777 other upstream 1002983 15498908 ~ 15500444 (-) True LOC110495442

Expression Profile