RNA id: TU1739619


Basic Information

Item Value
RNA id TU1739619
length 286
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G1519574
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14525381 ~ 14525666 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTTTCAATAACTCTGCCTCCGTCACACTTTCAACAGCTCTGCCTCCGTCACACTTTCAATTGCTCTGCCTCCGTCCCACTTTCAACAGCTCTACCTCCGTCCCACTTTCAACAGCTCTGCCTCCGTCACActttcaactgctctgcctccgtcACTCTTTCAACAGCTCTGCCTCCGTCCCACTTTCAATAGCTCTGCCTCCGTCACTCTTTCAATAGCTCTGCCTCCGTCACACTTTCAACAGCTCTGCCTCCCTCCCACTTTCAATAGCTCTGCCTCCGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1739614 lncRNA downstream 9858 14515310 ~ 14515523 (-) True G1519570
TU1739570 lncRNA downstream 29456 14495694 ~ 14495925 (-) True G1519535
TU1739566 lncRNA downstream 32815 14489696 ~ 14492566 (-) False G1519532
TU1739564 lncRNA downstream 33266 14489696 ~ 14492115 (-) False G1519532
TU1739565 lncRNA downstream 33266 14489745 ~ 14492115 (-) True G1519532
TU1739621 lncRNA upstream 1309 14526975 ~ 14527514 (-) False G1519575
TU1739624 lncRNA upstream 1309 14526975 ~ 14527207 (-) True G1519575
TU1740172 lncRNA upstream 10451 14536117 ~ 14536640 (-) True G1519987
TU1740183 lncRNA upstream 39480 14565146 ~ 14565460 (-) True G1519996
TU1740148 lncRNA upstream 55303 14580969 ~ 14587559 (-) False LOC110495477
XM_021570755.2 mRNA downstream 17789 14506227 ~ 14507592 (-) False LOC110495482
XM_021570762.2 mRNA downstream 650819 13865384 ~ 13874562 (-) True LOC110495488
XM_021570765.2 mRNA downstream 691975 13803381 ~ 13833406 (-) True LOC110495489
XM_036951891.1 mRNA downstream 708447 13803381 ~ 13816934 (-) False LOC110495489
XM_021570766.2 mRNA downstream 725375 13795409 ~ 13800006 (-) True LOC110495490
XM_036951907.1 mRNA upstream 4915 14530581 ~ 14578086 (-) False LOC110495480
XM_036951908.1 mRNA upstream 4915 14530581 ~ 14578086 (-) False LOC110495480
XM_036951910.1 mRNA upstream 4915 14530581 ~ 14578086 (-) False LOC110495480
XM_036951911.1 mRNA upstream 4915 14530581 ~ 14578086 (-) False LOC110495480
XM_036951912.1 mRNA upstream 4915 14530581 ~ 14578086 (-) False LOC110495480
TU1739599 other downstream 18063 14506400 ~ 14507318 (-) True LOC110495482
TU1739561 other downstream 39285 14484679 ~ 14486096 (-) True G1519529
TU1738967 other downstream 553092 13971081 ~ 13972289 (-) False G1518991
TU1738815 other downstream 783814 13739451 ~ 13741567 (-) True G1518858
TU1738554 other downstream 1122760 13384756 ~ 13402621 (-) True bcor
TU1740147 other upstream 55303 14580969 ~ 14587559 (-) False LOC110495477
TU1740149 other upstream 55303 14580969 ~ 14587559 (-) True LOC110495477
TU1740584 other upstream 750397 15276063 ~ 15277021 (-) True G1520339
TU1740777 other upstream 973242 15498908 ~ 15500444 (-) True LOC110495442
TU1741769 other upstream 1022210 15547876 ~ 15548483 (-) True G1521308

Expression Profile