RNA id: TCONS_00048226


Basic Information

Item Value
RNA id TCONS_00048226
length 2712
lncRNA type lincRNA
GC content 0.51
exon number 19
gene id XLOC_024394
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 2546343 ~ 2638817 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCTTGCCCACAAGAGTCCCTCCAACCCTCGGCACATCGAGAATGGTCTGAGCAGCAAATCTCCCAGGACTCCCTCTGGGCTTAAAAGCGTAGCAAGTATTCGGGACAAGATTTCCCAATGGGAAGGTAAAACTGAGACCATCGGCTCAAACACCCAAACAGTGGCACTGAAGGACGCTGAAGCTGGGAAGAAAACAGGACAGCCTGAAGTACAAAGGAAAGACAGCAAGAGACTTTTCAACTGGGAGAGACAAAACTGCGGCAAAGAGAATGGGAGCAAGTTTGGAGAATCCCTACACACTTCTGAGGGACCCGTGAAGGAAAAGGAACTGATTTTGGACAAATCCCCATTAGGGAAAATGACAGAAACTGGTCAGGATAAAAAGTCAGTGTTGACGCACATTAAAAAACTTGAGCAAGCCATGAAAGAGACTCCTTCCAAATCTTCATTCTCAATGCCAGGCAATTATTTCTGCCCTGCTTCCAAAGAGGAGCAGGAAGAGTCAGAAAGGAGGGGTGTAGAGCCAATCTTTGGGATTCTGGATGTGGTGAGATCCAGTGGCAGGCGAAGTCGGGATCCTGAGAATGTCTACAGCGAACCTGGAGCTCCTTCCATCAACCCCTTGCCAAAACCACAAAGGACCTTTCAACATCACACCCAAACAAACAACCCTACGGCCAACCACAGTTTTATCAAGGGTAAACGGAATCTTCCCCCTTTACCCTCAATCCCTCCTCCCCCCCTACCCTCCTGTCCACCACCTGGAGTCTGTAGAAGGGCAACCGGAAGAGTTCGAGACTCCATTAACAGGAAGTCTTACGAGTTTGAAGATCTTCTACAGTCTGCAGCAGAAGGATGTCGAACAGATTTGTACGAGCTTTCTAAGCTTGGCCTCACACGCACTTTATCAGAGGAGAATGTCTACGAGGATATCTTAGGTAACACGATTTTGGAGCAACGTTAtgtaaaaatgctcattttattttcaaggttACAGAATTCAGAGCGACGCAGTTTTAACTTACTGGAGCTGCGCAGGACAGGCGGAATCGCGTCCCCATCACGGGTCAGCCCTCCATCAACACCCAGCAGCCCAGACGACACCCCGTGCCTGTCTGGAGACCCGTACAACCGGCGGCGCAGGAAAATTCCAAAGATGGTGCAGAAAATCAACGGCATCTTTGAGGCGCGAAGGGGTAAAAAGCGGATGAAAAGGGTCTCGCAGTCCACAGAGTCCAGTTCAGGAAGAGTGACGGATGAAAACAGCGAGTCTGAAAGCGACACAGAGGAGAAACTGAAGGCTCACAGTCAGAGGTTAGTGTCGGTCCAGTCTATGCTGAAGCAGACGGGTCGATATCGCACTTTGGAGAGGGATTTAATGGACCTTCAAGAGAGGAAGCTGTTTGAATATTTCCTGGTTGTGGCTCTTCATAAGACCAAAGCCGGCGTGCCGTATTTACCTGAAGTTACACAGCAGTTTCCTCTTAAGCTGGAGCGAAGCTTTAAGTTCATGCGAGAAGCTGAAGACCAGCTGAAAGTGATCCCGCAGTTCTGTTTCCCTGATGCTAAAGACTGGGCACCTGTGGACAATTTCCCCAGTGAGACATTCTCATTCGTCTTAACCGGAGAAGATGGCAGTCGGAGATTTGGGTATTGTCGACGTTTATTGcCCAGTGGTAAAGGAAGGCGTTTACCTGAGGTTTACTGCATTGTCAGCAGACTGGGCTGTTTTGATCTGTTCTCCAAGATCCTGGATGAAGTGGAGAAGAGACGGGCCATTTCTCCAGCGCTGGTCCAGCCGTTTATGAGAGGAATCATGGAGGCTCCGTTTCCAGCGCCGGGACGAACCATCAGCATCAAGAACTTCCTCCCGGGTTCAGGAACAGAGGTGATAGATTTGTGCCGGCCCTCAGATTCCCGTCTGGAACATGTGGATTTCGAGTGTTTGTTTTCCTCTCTGAGCTTGCGTCTGCTTCTGCGGGTCTTTGCTTCTCTTCTGCTTGAGCGACGGGTCATCTTTACCGCAGATAAGCTCAGCACTCTCTCCCAGTGTTGTCATGCTGTGGTGGCTCTGCTGTACCCATTCACCTGGCAGCACACCTACATCCCAGTTCTGCCTCCAGCAATGATGGACATCGTCTGCACACCGACACCTTTCATCGTGGGGCTTCTGTCCAGCTCACTGACCCGCCTGAAAGAGCTCCCGCTGGAGGAGGTCCTGGTGGTCGACCTCGGCAGCAGCCGTTTCCTGCGACAGATGGATGATGAAGACTCGATTCTGCCTCATAAACTGCAGGCGGCGCTCGAACACGTGCTGGAACGGAGGAAAGAGTTCGCCTCTGACCTGGCAGATAATCCTAGCGGTGAGGATTCTGTGGTGTCGGAGGCGTTCGTGCGTTTCTTCGTGGAGATCGTGGGTCATTACTCCCTCTTCATGGGTGGCAGTGATCGAGATGAAGAATCCTCACGCGAGGCGTTCCGTAAAGCCGTCTCCTCTAAAAGCCTGCGCAGGTTCCTGGAGGTCTTCATGGAGACGCAGATGTTCGCCGGGTTCCTGCAGGAGAGAGAGCTGCGGAGGCAGGGCCTGAAAGGTCTGTTTGAGATGAGGGCTCAGGACTATCTAGATTCTCTGCCCGGCGGCGAGAATAGAGGCGTCAACAAGTTCCTCAAAGGTTTAGGACACAAGATGAAGTTTCTGTCCAAAAAGTGA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0007224 smoothened signaling pathway biological_process
GO:0043009 chordate embryonic development biological_process
GO:0021575 hindbrain morphogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0030182 neuron differentiation biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0006412 translation biological_process
GO:0035051 cardiocyte differentiation biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0097485 neuron projection guidance biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0061564 axon development biological_process
GO:0007389 pattern specification process biological_process
GO:0050793 regulation of developmental process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007411 axon guidance biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0022008 neurogenesis biological_process
GO:0030902 hindbrain development biological_process
GO:0048699 generation of neurons biological_process
GO:0031175 neuron projection development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000188890

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049316 lncRNA downstream 61295 2483112 ~ 2485048 (-) False XLOC_024393
TCONS_00049315 lncRNA downstream 61295 2483112 ~ 2485048 (-) False XLOC_024393
TCONS_00049314 lncRNA downstream 61295 2483112 ~ 2485048 (-) True XLOC_024393
TCONS_00049313 lncRNA downstream 61296 2483112 ~ 2485047 (-) False XLOC_024393
TCONS_00048231 lncRNA upstream 5798 2582285 ~ 2638817 (-) True XLOC_024394
TCONS_00048232 lncRNA upstream 96004 2672491 ~ 2685982 (-) False XLOC_024395
TCONS_00049074 lncRNA upstream 108870 2685357 ~ 2685938 (-) True XLOC_024395
TCONS_00048238 lncRNA upstream 440091 3016578 ~ 3025127 (-) False XLOC_024397
TCONS_00049317 lncRNA upstream 440091 3016578 ~ 3027087 (-) False XLOC_024397
TCONS_00048224 mRNA downstream 191236 2333258 ~ 2355107 (-) True XLOC_024392
TCONS_00048218 mRNA downstream 464972 2002715 ~ 2081371 (-) False XLOC_024387
TCONS_00048219 mRNA downstream 464972 2003183 ~ 2081371 (-) True XLOC_024387
TCONS_00048216 mRNA downstream 825607 1695547 ~ 1720736 (-) True XLOC_024384
TCONS_00048215 mRNA downstream 903948 1635210 ~ 1642395 (-) True XLOC_024383
TCONS_00048233 mRNA upstream 130235 2706722 ~ 2723902 (-) False XLOC_024396
TCONS_00048234 mRNA upstream 130239 2706726 ~ 2723682 (-) False XLOC_024396
TCONS_00048235 mRNA upstream 131727 2708214 ~ 2724033 (-) True XLOC_024396
TCONS_00048236 mRNA upstream 439189 3015676 ~ 3034668 (-) False XLOC_024397
TCONS_00048240 mRNA upstream 470642 3047129 ~ 3058687 (-) False XLOC_024398
TCONS_00048212 other downstream 916594 1629655 ~ 1629749 (-) True XLOC_024382
TCONS_00048188 other downstream 2055558 488821 ~ 490785 (-) True XLOC_024368
TCONS_00048237 other upstream 439683 3016170 ~ 3034668 (-) False XLOC_024397
TCONS_00048288 other upstream 1749129 4325616 ~ 4325731 (-) True XLOC_024429
TCONS_00048296 other upstream 2314280 4890767 ~ 4904432 (-) True XLOC_024434
TCONS_00048299 other upstream 2764475 5340962 ~ 5341102 (-) True XLOC_024438
TCONS_00048304 other upstream 3351684 5928171 ~ 5928286 (-) True XLOC_024444

Expression Profile

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