RNA id: TU1740370


Basic Information

Item Value
RNA id TU1740370
length 1860
lncRNA type intronic
GC content 0.34
exon number 4
gene id G1520153
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14911912 ~ 14921507 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTGATATtaatctttctcctgtattgatatgacacTTTCTCctctattgatatgactcttctCCTGTactgatatgactctttctcctgtattgatatgactcttctCCTGTactgatatgactctttctcctgtattgatatgactctttctcctgtattgatatgactctttctcctgtattgatatgactctttctcctgtattgatatgactctttcccctgtattgatatgactctttctcctgtattgacattactctttctcctgtattgatatgactctttctcctgtattgatatgactctttctcctgtattgatatgactctttcccctgtattgatatgactctttctcctgtattgacatgactctttctcctgtattgatatgactctttctcctgtattgatatgactctattactttattgatatgactctcctgtattgatatgaatcttcctcctgtattgatatgactctttctcctgtattgatataaatctttctcctgtattgatatgactctcctGTGTTGATATGAATcttcctcctgtattgatataaatcttcctcctgtattgatatgactctttctcctatATTGATATGAATCctcctcctgtattgatatgaatcttcctcctgtattgatatgactctttctcctgtattgatatgaatcttctcctgtattgatatgactctcctgtattgatatgaatctttctcctgtattgatatgactccctctcctgtattgatatgactctctcTCTTATATTGATATGACTcgttctcctgtattgatatgactctttctcctgtattgatatgactcttttacTTTATTGATATGATtatcctgtattgatatgaatcttcctcctgtattgatatgaatcttcctcctgtattgatatgactctttctcctgtattgatatgaatctttctcctgtattgatatgactctcctgtattgatatgaatctttctcctgtattgatattactctttctcctgtattgatatgactcttctCCTGTactgatatgactctttctcctgtattgatatgactctttctcctgtattgatatgactctttctcctgtattgatatgactctttctcctgtattgatatgactctttgtcctgtattgacatgactctttctcctgtattgatatgactctttctcctgtattgatatgactcttttactttattgatatgactctcctgtattgatatgaatcttcctcctgtattgatatgactctttctcctgtattgatatgactctttctcctgtattgatatgactcttttacTTTATTGTgactctcctgtattgatatgactctcctGTATTGATAAGAAACTTCCtgctgtattgatatgactcttttactgtattgatatgaatatttctcctgtattgatatgactccctctcctgtattgatatgactctctctcttatattgatatgactctttctcctgtattgatatgactcttttacTTTATTGACATGACTCTCCTGTattgatatgaatcttcctcctgtattgatatgactctttctcctgtattgatatgaatctttctcctgtattgatatgaatcttcctcctgtattgatatgactctttctcctgtattgatatgaatcttcctcctgtattgatatgaatcttcctcctgtattgatatgaatcttcctcctgtattgatatgactctttctcctatattgatatgaatcttcctcctgtattgatatgaatctttctcctgtattgatatgactctttaaCTTTATTGTgactctcctgtattgata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1740366 lncRNA downstream 4301 14907412 ~ 14907611 (-) True G1520149
TU1740343 lncRNA downstream 91910 14818848 ~ 14820002 (-) True G1520132
TU1740342 lncRNA downstream 92304 14818848 ~ 14819608 (-) False G1520132
TU1740338 lncRNA downstream 100747 14810557 ~ 14811165 (-) True G1520128
TU1740261 lncRNA downstream 212556 14698720 ~ 14699356 (-) True G1520063
TU1740390 lncRNA upstream 10210 14931717 ~ 14931957 (-) True G1520159
TU1740392 lncRNA upstream 12734 14934241 ~ 14934533 (-) True G1520161
TU1740394 lncRNA upstream 23164 14944671 ~ 14945241 (-) True G1520163
TU1740398 lncRNA upstream 35519 14957026 ~ 14957274 (-) True G1520167
TU1740401 lncRNA upstream 44795 14966302 ~ 14966626 (-) True G1520170
XM_021570723.2 mRNA downstream 81788 14814602 ~ 14830124 (-) True LOC110495454
XM_036951917.1 mRNA downstream 118966 14784852 ~ 14792946 (-) False LOC110495456
XM_036951918.1 mRNA downstream 118966 14784868 ~ 14792946 (-) True LOC110495456
XM_021570732.2 mRNA downstream 159373 14751585 ~ 14752539 (-) True LOC110495458
XM_036951413.1 mRNA downstream 171807 14672166 ~ 14740105 (-) True LOC110497004
NM_001124649.1 mRNA upstream 265318 15186825 ~ 15203204 (-) True igfbp2
NM_001124200.1 mRNA upstream 345143 15266650 ~ 15268117 (-) True inh
XM_036951937.1 mRNA upstream 424473 15345980 ~ 15406544 (-) False LOC110495436
XR_005037379.1 mRNA upstream 426458 15347965 ~ 15406547 (-) True LOC110495436
XM_021570683.2 mRNA upstream 572062 15493569 ~ 15500636 (-) False LOC110495442
TU1740147 other downstream 324353 14580969 ~ 14587559 (-) False LOC110495477
TU1740149 other downstream 324353 14580969 ~ 14587559 (-) True LOC110495477
TU1739599 other downstream 404594 14506400 ~ 14507318 (-) True LOC110495482
TU1739561 other downstream 425816 14484679 ~ 14486096 (-) True G1519529
TU1738967 other downstream 939623 13971081 ~ 13972289 (-) False G1518991
TU1740584 other upstream 354556 15276063 ~ 15277021 (-) True G1520339
TU1740777 other upstream 577401 15498908 ~ 15500444 (-) True LOC110495442
TU1741769 other upstream 626369 15547876 ~ 15548483 (-) True G1521308
TU1741790 other upstream 681330 15602837 ~ 15603905 (-) True LOC110495443
TU1741859 other upstream 764394 15685901 ~ 15759234 (-) False G1521387

Expression Profile