RNA id: TU1740142


Basic Information

Item Value
RNA id TU1740142
length 477
lncRNA type antisense_over
GC content 0.51
exon number 1
gene id G1519970
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15406062 ~ 15406538 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACACTTCCTTTGTTCCACATTGACAATATAGCCCACAAATCAAAGCCACTCTTCAGAATCTCCCGTCAGGGTTCAAGAAGACTTGGACCCCATTGATTGGAATGACTTTTGACCCAGGTGTAAGTCTGGTTCCGCGTCCCTTAAAATGGCCGCTGTCTCCTCTGTCCGGTAGGGATATGTTTCCCGCTCTCAGTGGTCTGCTGCAGTCCTGCTCTCTCACTAAGACAAGAATGTCTCTCAAGATGTCCTGACTAAATAAAAGCTAAATGAGTGTCTTGATCAGCATCAAACAGATCCACAGCTCTCAAGGCTCGCCCTGTTGCTGTATCTGTCCATCCAGTGAGGTGGCTGTGGCTTCTGGAACTGGTGGGGGTCTGGAGCTCCTGTACAGGGACCACACAATCCACTCTGACTGCCTGGTGGTTTCCGTCACCCGGTCCTAAGGCACCCGGTGTGTCaatgtcagggagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1740140 lncRNA upstream 1297 15403331 ~ 15404765 (+) True G1519968
TU1740116 lncRNA upstream 7061 15358410 ~ 15399001 (+) True G1519951
TU1740138 lncRNA upstream 7521 15396269 ~ 15398541 (+) True G1519966
TU1740137 lncRNA upstream 8210 15396269 ~ 15397852 (+) False G1519966
TU1740130 lncRNA upstream 18881 15374782 ~ 15387181 (+) True G1519959
TU1740675 lncRNA downstream 6759 15413297 ~ 15413562 (+) True G1520402
TU1740677 lncRNA downstream 8951 15415489 ~ 15415714 (+) True G1520404
TU1740709 lncRNA downstream 21636 15428174 ~ 15428503 (+) True G1520421
TU1740701 lncRNA downstream 87408 15493946 ~ 15494848 (+) True G1520413
TU1740738 lncRNA downstream 89886 15496424 ~ 15497199 (+) True G1520450
XM_021570717.2 mRNA upstream 61260 15333385 ~ 15344802 (+) True LOC110495449
XM_036951932.1 mRNA upstream 73675 15276578 ~ 15332387 (+) False LOC110496998
XM_036951940.1 mRNA downstream 12523 15419061 ~ 15490199 (+) False LOC110495439
XM_036951941.1 mRNA downstream 12523 15419061 ~ 15490199 (+) False LOC110495439
XM_036951938.1 mRNA downstream 44651 15451189 ~ 15490199 (+) False LOC110495439
XM_036951939.1 mRNA downstream 44651 15451189 ~ 15490199 (+) False LOC110495439
XM_036951942.1 mRNA downstream 44652 15451190 ~ 15490199 (+) True LOC110495439
TU1740022 other upstream 189818 15208969 ~ 15216244 (+) False LOC110495440
TU1739843 other upstream 505890 14898256 ~ 14900172 (+) True il8r
TU1739825 other upstream 591176 14813982 ~ 14814886 (+) True G1519733
TU1739660 other upstream 848716 14556326 ~ 14557346 (+) False LOC110495481
TU1739573 other upstream 906925 14498786 ~ 14499137 (+) True G1519538
TU1740959 other downstream 349955 15756493 ~ 15816005 (+) True G1520649
TU1740883 other downstream 389814 15796352 ~ 15799881 (+) True LOC110495644
TU1741071 other downstream 512619 15919157 ~ 15922899 (+) True G1520742
TU1741077 other downstream 531692 15938230 ~ 15938818 (+) False G1520748
TU1741078 other downstream 531863 15938401 ~ 15938818 (+) True G1520748

Expression Profile