RNA id: TCONS_00048238


Basic Information

Item Value
RNA id TCONS_00048238
length 661
lncRNA type retained_intron
GC content 0.52
exon number 5
gene id XLOC_024397
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 3015676 ~ 3034668 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTGCAGGACAGGCCTGTTGGCTAGTTGCTGTGTGGTGTGAAAGCCCTGTATTTGTTGTTACTGGCCGACATGTAGCTGAGGATTGTGGGAAATTTGTGTGTGGTTCTCCTCAGGCAAACAGAACAACTGGCCTCCCCTGCCCAAGAGATTTCCCATCCAGCCTTGCTTCTACCAGGACTTCTCAGAGGAGATCCCTCAGGAGCACCAGCGTCTCTGCAAGATGATCTACTACCTGTGGATGTgggAGTGTGTGACGCTGTTTCTGAATGTTCTGGCGTGTCTGGCTGATTTCACCACTAACTCAGAGGCAGGCGTTGACTTCGGCCTCTCCATCCTCTGGTTCATCCTCTTCGCTCCCTGCTCCTTCATCTGCTGGTTCAGGCCCGTCTATAAGGCCTTCAGGTCTGACAGCTCCTtcaatttcttcttcttcttcttcgtttTCTTCGCTCAAATCGTCATTTCCGTCATCCAGGCTGTGGGGATTCCCAAATGGGGAAACAGCGGCTGGATTTCCGCCATATCAGTGATCGGCTCTAATAAAGCAGTGGGAGCCATTATGATGGTGGTTGCGGCTTTCTTTACAGCCGCTGCGGCGCTCTCTGTCGTTTTACTCAAAATGGTTCATTCGCACTATCGCCGCACCGGGGCCAGTTTCCA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0032588 trans-Golgi network membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0055038 recycling endosome membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2702 Predicted to be involved in protein transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in recycling endosome membrane and trans-Golgi network membrane. Orthologous to human SCAMP2 (secretory carrier membrane protein 2).

Ensembl:

ensembl_id ENSDART00000148374

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00048232 lncRNA downstream 330596 2672491 ~ 2685982 (-) False XLOC_024395
TCONS_00049074 lncRNA downstream 330640 2685357 ~ 2685938 (-) True XLOC_024395
TCONS_00048230 lncRNA downstream 377761 2576247 ~ 2638817 (-) False XLOC_024394
TCONS_00048231 lncRNA downstream 377761 2582285 ~ 2638817 (-) True XLOC_024394
TCONS_00048229 lncRNA downstream 434056 2569671 ~ 2582522 (-) False XLOC_024394
TCONS_00048241 lncRNA upstream 28162 3053289 ~ 3058722 (-) True XLOC_024398
TCONS_00048247 lncRNA upstream 164340 3189467 ~ 3192397 (-) True XLOC_024401
TCONS_00048251 lncRNA upstream 201217 3226344 ~ 3230146 (-) True XLOC_024403
TCONS_00049318 lncRNA upstream 277397 3302524 ~ 3306305 (-) True XLOC_024405
TCONS_00049319 lncRNA upstream 352696 3377823 ~ 3379551 (-) False XLOC_024407
TCONS_00048235 mRNA downstream 292545 2708214 ~ 2724033 (-) True XLOC_024396
TCONS_00048233 mRNA downstream 292676 2706722 ~ 2723902 (-) False XLOC_024396
TCONS_00048234 mRNA downstream 292896 2706726 ~ 2723682 (-) False XLOC_024396
TCONS_00048224 mRNA downstream 661471 2333258 ~ 2355107 (-) True XLOC_024392
TCONS_00048218 mRNA downstream 935207 2002715 ~ 2081371 (-) False XLOC_024387
TCONS_00048240 mRNA upstream 22002 3047129 ~ 3058687 (-) False XLOC_024398
TCONS_00048242 mRNA upstream 44544 3069671 ~ 3087556 (-) False XLOC_024399
TCONS_00048243 mRNA upstream 45100 3070227 ~ 3079214 (-) True XLOC_024399
TCONS_00048244 mRNA upstream 94683 3119810 ~ 3139805 (-) False XLOC_024400
TCONS_00048245 mRNA upstream 99733 3124860 ~ 3132060 (-) True XLOC_024400
TCONS_00048212 other downstream 1386829 1629655 ~ 1629749 (-) True XLOC_024382
TCONS_00048188 other downstream 2525793 488821 ~ 490785 (-) True XLOC_024368
TCONS_00048288 other upstream 1300489 4325616 ~ 4325731 (-) True XLOC_024429
TCONS_00048296 other upstream 1865640 4890767 ~ 4904432 (-) True XLOC_024434
TCONS_00048299 other upstream 2315835 5340962 ~ 5341102 (-) True XLOC_024438
TCONS_00048304 other upstream 2903044 5928171 ~ 5928286 (-) True XLOC_024444
TCONS_00048310 other upstream 3046468 6071595 ~ 6079431 (-) True XLOC_024448

Expression Profile

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