RNA id: TU1742067



Basic Information


Item Value
RNA id TU1742067
length 217
lncRNA type antisense_over
GC content 0.52
exon number 1
gene id G1521564
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15995718 ~ 15995934 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTCACCTCTCTTGTTGCTGGGCTTCTTGGGTTGCTGTGGAAGGGACTTCTTGAAGTTTCGGCCACTCAGACTGTCTATGCCGTCAGTGCTGGGCCGGGATGCAGTCACGCTACCACCAACATCCACAGGAGGCACTGTGGTGGTTTTCACTCTATCCACCTCAGCTACCTTCAGTACAGGAATAGAATAAGTCACACTTTAGTTTCAAGCAGGCAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1742065 lncRNA downstream 1643 15993634 ~ 15994075 (-) True G1521562
TU1742031 lncRNA downstream 25443 15970045 ~ 15970275 (-) True G1521540
TU1742030 lncRNA downstream 27540 15967929 ~ 15968178 (-) True G1521539
TU1742029 lncRNA downstream 28060 15967435 ~ 15967658 (-) True G1521538
TU1742028 lncRNA downstream 30193 15964698 ~ 15965525 (-) True G1521537
TU1742068 lncRNA upstream 16757 16012691 ~ 16013020 (-) True G1521565
TU1742069 lncRNA upstream 17303 16013237 ~ 16013586 (-) True G1521566
TU1742075 lncRNA upstream 37035 16032969 ~ 16033299 (-) True G1521572
TU1742079 lncRNA upstream 41139 16037073 ~ 16037440 (-) True G1521575
TU1742086 lncRNA upstream 51009 16046943 ~ 16052241 (-) True G1521582
XM_036951989.1 mRNA downstream 66945 15877503 ~ 15928773 (-) False LOC110495653
XM_036951990.1 mRNA downstream 66945 15877503 ~ 15928773 (-) True LOC110495653
XM_036951991.1 mRNA downstream 67420 15877503 ~ 15928298 (-) False LOC110495653
XM_036951993.1 mRNA downstream 95508 15877503 ~ 15900210 (-) False LOC110495653
XM_036951992.1 mRNA downstream 95519 15877503 ~ 15900199 (-) False LOC110495653
XM_036951995.1 mRNA upstream 1032 15996966 ~ 16001636 (-) False LOC110497061
XM_036951996.1 mRNA upstream 1032 15996966 ~ 16015860 (-) False LOC110497061
XM_036951994.1 mRNA upstream 1034 15996968 ~ 16008823 (-) True LOC110497061
XM_021570997.2 mRNA upstream 26632 16022566 ~ 16024378 (-) False LOC110495656
XM_036951999.1 mRNA upstream 26632 16022566 ~ 16024378 (-) False LOC110495656
TU1742066 other downstream 401 15994964 ~ 15995317 (-) True G1521563
TU1741988 other downstream 123252 15870976 ~ 15872466 (-) True LOC110497059
TU1741859 other downstream 236484 15685901 ~ 15759234 (-) False G1521387
TU1741790 other downstream 391813 15602837 ~ 15603905 (-) True LOC110495443
TU1741769 other downstream 447235 15547876 ~ 15548483 (-) True G1521308
TU1742041 other upstream 26533 16022467 ~ 16024354 (-) False LOC110495656
TU1742042 other upstream 26533 16022467 ~ 16024354 (-) False LOC110495656
TU1742043 other upstream 26672 16022606 ~ 16024382 (-) False LOC110495656
TU1742044 other upstream 26672 16022606 ~ 16024354 (-) True LOC110495656
TU1742040 other upstream 59194 16055128 ~ 16084966 (-) True G1521546

Expression Profile