RNA id: TU1741112


Basic Information

Item Value
RNA id TU1741112
length 236
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1520780
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16024542 ~ 16024777 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGAAACATGTTATGACGAATGGAAAAGAACCGTCTAGAAGTGACTCAAGAGATATTCTTACTTCTTACTACAAAGTTACAAATTTGTAACGGGGTTTGCTAATCTGattagccatgttattattgctGAATCAGATTAAATGTAGACCTACTCCATCACCAATTATGGATTTAACCATTCGAGTTTCACAAACTTTGTTGTGCTTCTAGCCAACATCTAGCTATAGACACCGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1741110 lncRNA upstream 7890 16016230 ~ 16016652 (+) True G1520778
TU1741109 lncRNA upstream 8692 16015607 ~ 16015850 (+) True G1520777
TU1741108 lncRNA upstream 15167 16009045 ~ 16009375 (+) True G1520776
TU1741063 lncRNA upstream 30530 15993628 ~ 15994012 (+) True LOC110495654
TU1741099 lncRNA upstream 46294 15977986 ~ 15978248 (+) True G1520767
TU1741113 lncRNA downstream 203 16024980 ~ 16025267 (+) True G1520781
TU1741114 lncRNA downstream 739 16025516 ~ 16025715 (+) True G1520782
TU1741119 lncRNA downstream 7376 16032153 ~ 16032400 (+) True G1520787
TU1741129 lncRNA downstream 28314 16053091 ~ 16053397 (+) True G1520797
TU1741137 lncRNA downstream 131123 16155900 ~ 16156236 (+) True G1520804
XM_036951997.1 mRNA upstream 2646 16009775 ~ 16021896 (+) False LOC110495655
XM_036951998.1 mRNA upstream 2646 16017021 ~ 16021896 (+) True LOC110495655
XM_021570996.2 mRNA upstream 27683 15993613 ~ 15996859 (+) False LOC110495654
XM_036951947.1 mRNA upstream 159503 15852644 ~ 15865039 (+) True LOC110495649
XR_005037381.1 mRNA upstream 160531 15852644 ~ 15864011 (+) False LOC110495649
XM_036952000.1 mRNA downstream 22368 16047145 ~ 16060945 (+) False LOC110495658
XM_036952002.1 mRNA downstream 22369 16047146 ~ 16060945 (+) False LOC110495658
XM_036952001.1 mRNA downstream 26643 16051420 ~ 16060945 (+) True LOC110495658
XM_021570998.2 mRNA downstream 51215 16075992 ~ 16089889 (+) True LOC110495657
XM_036952018.1 mRNA downstream 247459 16272236 ~ 16277918 (+) False LOC110495667
TU1741077 other upstream 85724 15938230 ~ 15938818 (+) False G1520748
TU1741078 other upstream 85724 15938401 ~ 15938818 (+) True G1520748
TU1741071 other upstream 101643 15919157 ~ 15922899 (+) True G1520742
TU1740959 other upstream 208537 15756493 ~ 15816005 (+) True G1520649
TU1741359 other downstream 440736 16465513 ~ 16468423 (+) True LOC110495674
TU1742927 other downstream 1599039 17623816 ~ 17627644 (+) False LOC110527374
TU1743047 other downstream 1741442 17766219 ~ 17766694 (+) True G1522415
TU1743076 other downstream 1814892 17839669 ~ 17844014 (+) False G1522437
TU1743077 other downstream 1814892 17839669 ~ 17844014 (+) False G1522437

Expression Profile