RNA id: TU1742232


Basic Information

Item Value
RNA id TU1742232
length 669
RNA type TUCP
GC content 0.40
exon number 1
gene id G1521712
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16418250 ~ 16418918 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttctccccattttagctactgttgtaaactgttttgaccatgacagtttacaatccagggttactccaagcagtttagtcacctcaacttgctcaatttccacattactCATTACAAGACGTAGTTGAGGTttaaggtttagtgaatgatttgttccaaatacaatgcttttagttttagaaatatttaggactagctTATTCCTTGCTACAAATTttaaaactaactgcagctctttgttaagtgttgcagtcatttcagttgctgtagtagctgacgtgtatagtgttgagtcatccgcatacatagacacactggccttactcaaagccagtggcatgtcgttagtaaagattgaaaaaagcaaggggcctaaacagctaccccgTGGAATTCATGATTCTACCTTGATTGTgcttgagaggcttccattaaagaacaccctctgtgttctgttagacaagtaactctttatccacattatagcagggggtgtaaagccataacacatacgcttttccagcagcagactcaaaagctgcactgaagtctaacaagacagcccccacgatcattttatcatcaatttctttcagccaatcatcagtaatttgtgtaagcaatgtgcttgttgagtgtccttccctataagtgtgctgaaagtctgC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1742231 lncRNA downstream 4658 16412868 ~ 16413592 (-) True G1521711
TU1742214 lncRNA downstream 63517 16354214 ~ 16354733 (-) True G1521695
TU1742210 lncRNA downstream 71792 16346098 ~ 16346458 (-) True G1521691
TU1742211 lncRNA downstream 73010 16345052 ~ 16345240 (-) True G1521692
TU1742200 lncRNA downstream 83053 16334895 ~ 16335197 (-) True G1521683
TU1742247 lncRNA upstream 12188 16431106 ~ 16431308 (-) True G1521725
TU1742260 lncRNA upstream 28454 16447372 ~ 16447575 (-) True G1521738
TU1742262 lncRNA upstream 30322 16449240 ~ 16449470 (-) True G1521740
TU1742279 lncRNA upstream 60225 16479143 ~ 16479785 (-) True G1521757
TU1742286 lncRNA upstream 65978 16484896 ~ 16486262 (-) True G1521763
XM_021571029.2 mRNA downstream 6741 16386046 ~ 16411509 (-) False LOC110495671
XM_021571030.2 mRNA downstream 6741 16386046 ~ 16411509 (-) False LOC110495671
XM_021571031.2 mRNA downstream 6741 16386046 ~ 16411509 (-) False LOC110495671
XM_021571032.2 mRNA downstream 6741 16386046 ~ 16411509 (-) False LOC110495671
XM_021571033.2 mRNA downstream 6741 16386046 ~ 16411509 (-) False LOC110495671
XM_021571048.2 mRNA upstream 55077 16473995 ~ 16476252 (-) True LOC110495679
XM_021571047.2 mRNA upstream 76043 16494961 ~ 16516009 (-) True LOC110495677
XM_036952040.1 mRNA upstream 97749 16516667 ~ 16544411 (-) False LOC110495681
XM_036952036.1 mRNA upstream 97749 16516667 ~ 16567199 (-) False LOC110495681
XM_036952034.1 mRNA upstream 97749 16516667 ~ 16584000 (-) False LOC110495681
TU1742040 other downstream 333284 16055128 ~ 16084966 (-) True G1521546
TU1742043 other downstream 393868 16022606 ~ 16024382 (-) False LOC110495656
TU1742041 other downstream 393896 16022467 ~ 16024354 (-) False LOC110495656
TU1742042 other downstream 393896 16022467 ~ 16024354 (-) False LOC110495656
TU1742044 other downstream 393896 16022606 ~ 16024354 (-) True LOC110495656
TU1742516 other upstream 518734 16937652 ~ 16942594 (-) True LOC110495686
TU1742514 other upstream 590464 17009382 ~ 17011378 (-) True LOC118941063
TU1743542 other upstream 1022741 17441659 ~ 17450178 (-) True G1522794
TU1743656 other upstream 1223500 17642418 ~ 17669959 (-) False LOC110528763
TU1743609 other upstream 1269012 17687930 ~ 17702753 (-) True LOC118941106

Expression Profile