RNA id: TU1742555



Basic Information


Item Value
RNA id TU1742555
length 204
lncRNA type intronic
GC content 0.52
exon number 1
gene id G1521985
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16925898 ~ 16926101 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaacatttaaacgtgttaaccctcgcaaggctgcaggcccagacggcatccccagccgcgccctcagagcatgcgcagaccagctggctggtgtgtttacggacatgttcaatcaatccttatcccagtctgctgttcccacatgatTCAAGagtgccaccattgttcctgttcccaagaaagctcaggtaactgagctaaacg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1742551 lncRNA downstream 11664 16913908 ~ 16914234 (-) True G1521981
TU1742550 lncRNA downstream 12054 16913518 ~ 16913844 (-) True G1521980
TU1742549 lncRNA downstream 13536 16911912 ~ 16912362 (-) True G1521979
TU1742474 lncRNA downstream 143344 16767349 ~ 16782554 (-) True G1521915
TU1742472 lncRNA downstream 158348 16766149 ~ 16767550 (-) True G1521913
TU1742556 lncRNA upstream 547 16926648 ~ 16926995 (-) True G1521986
TU1742562 lncRNA upstream 8955 16935056 ~ 16935318 (-) True G1521992
TU1742600 lncRNA upstream 105848 17031949 ~ 17032484 (-) True G1522026
TU1742648 lncRNA upstream 248390 17174491 ~ 17174758 (-) True G1522068
TU1742669 lncRNA upstream 275252 17201353 ~ 17201646 (-) True G1522089
XM_021571062.2 mRNA downstream 190014 16732325 ~ 16735884 (-) True LOC110495684
XM_036952042.1 mRNA downstream 315061 16585783 ~ 16610837 (-) False LOC110495682
XM_036952041.1 mRNA downstream 315063 16585783 ~ 16610835 (-) False LOC110495682
XM_036952038.1 mRNA downstream 341898 16516667 ~ 16584000 (-) False LOC110495681
XM_036952050.1 mRNA upstream 21666 16947767 ~ 16969915 (-) False LOC110495685
XM_036952051.1 mRNA upstream 21666 16947767 ~ 16969915 (-) False LOC110495685
XM_036952052.1 mRNA upstream 21666 16947767 ~ 16969915 (-) True LOC110495685
XM_021571066.2 mRNA upstream 44952 16971053 ~ 16972390 (-) True LOC110495687
XR_005037335.1 mRNA upstream 83282 17009383 ~ 17011759 (-) False LOC118941063
TU1742232 other downstream 506980 16418250 ~ 16418918 (-) True G1521712
TU1742040 other downstream 840932 16055128 ~ 16084966 (-) True G1521546
TU1742043 other downstream 901516 16022606 ~ 16024382 (-) False LOC110495656
TU1742042 other downstream 901544 16022467 ~ 16024354 (-) False LOC110495656
TU1742516 other upstream 11551 16937652 ~ 16942594 (-) True LOC110495686
TU1742514 other upstream 83281 17009382 ~ 17011378 (-) True LOC118941063
TU1743542 other upstream 515558 17441659 ~ 17450178 (-) True G1522794
TU1743656 other upstream 716317 17642418 ~ 17669959 (-) False LOC110528763
TU1743609 other upstream 761829 17687930 ~ 17702753 (-) True LOC118941106

Expression Profile