RNA id: TU1741645


Basic Information

Item Value
RNA id TU1741645
length 221
lncRNA type intronic
GC content 0.46
exon number 1
gene id G1521234
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16934919 ~ 16935139 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCATTAGACAGAGAAACCAGAGGACAGAAATAAACTGCTTTCCTTTTCTCATCAAATACTGACCTCCTCAGTCCATGTCATTACTGGCTAGGTTCAGAGCAGGCTTTATGAAGGATGCAGAGATGGATGGATAAAGGGGGAGGGTTTAAGTTGGCTTTAACCCATCTAACATCCACTAATGGCGGACAGCCAGGTAGCTTTTAACTCCCGATGTTGTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1741641 lncRNA upstream 2452 16927179 ~ 16932467 (+) True G1521230
TU1741638 lncRNA upstream 8601 16926109 ~ 16926318 (+) True G1521228
TU1741637 lncRNA upstream 9225 16925162 ~ 16925694 (+) True G1521227
TU1741636 lncRNA upstream 10150 16924525 ~ 16924769 (+) True G1521226
TU1741635 lncRNA upstream 10742 16923798 ~ 16924177 (+) True G1521225
TU1741647 lncRNA downstream 822 16935961 ~ 16937257 (+) False G1521235
TU1741648 lncRNA downstream 1824 16936963 ~ 16937257 (+) True G1521235
TU1741653 lncRNA downstream 9587 16944726 ~ 16945089 (+) True G1521240
TU1741694 lncRNA downstream 47601 16982740 ~ 16984131 (+) True LOC110497065
TU1742658 lncRNA downstream 257136 17192275 ~ 17192511 (+) True G1522078
XM_036952043.1 mRNA upstream 251842 16613649 ~ 16683077 (+) False LOC110495683
XM_036952044.1 mRNA upstream 251842 16613649 ~ 16683077 (+) False LOC110495683
XM_036952046.1 mRNA upstream 251842 16613649 ~ 16683077 (+) False LOC110495683
XM_036952048.1 mRNA upstream 254022 16613649 ~ 16680897 (+) False LOC110495683
XM_036952047.1 mRNA upstream 254037 16613649 ~ 16680882 (+) False LOC110495683
XM_036952055.1 mRNA downstream 37944 16973083 ~ 16984148 (+) False LOC110497065
XM_036952056.1 mRNA downstream 37944 16973083 ~ 16984148 (+) False LOC110497065
XM_036952057.1 mRNA downstream 37944 16973083 ~ 16984148 (+) False LOC110497065
XM_036952058.1 mRNA downstream 38616 16973755 ~ 16984148 (+) False LOC110497065
XM_021571069.2 mRNA downstream 52601 16987740 ~ 17001956 (+) False LOC110495688
TU1741359 other upstream 466496 16465513 ~ 16468423 (+) True LOC110495674
TU1741077 other upstream 996101 15938230 ~ 15938818 (+) False G1520748
TU1741078 other upstream 996101 15938401 ~ 15938818 (+) True G1520748
TU1741071 other upstream 1012020 15919157 ~ 15922899 (+) True G1520742
TU1740883 other upstream 1135038 15796352 ~ 15799881 (+) True LOC110495644
TU1742927 other downstream 688677 17623816 ~ 17627644 (+) False LOC110527374
TU1743047 other downstream 831080 17766219 ~ 17766694 (+) True G1522415
TU1743076 other downstream 904530 17839669 ~ 17844014 (+) False G1522437
TU1743077 other downstream 904530 17839669 ~ 17844014 (+) False G1522437
TU1743079 other downstream 904530 17839669 ~ 17844014 (+) True G1522437

Expression Profile