RNA id: TU1743617


Basic Information

Item Value
RNA id TU1743617
length 555
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1522860
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17684798 ~ 17685352 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagattacagatCTCTCGCTGGAACCAGGGAGTGTGATGGTCTTCGGTGTGCTGGGGTCGTTTATGGGTCAGATCCACACACCATAGATTACTTCTGCTTTTTTTATGCATTGGAAATAGTAACAACTGTTTCAAACCACTTAATACAACAAGaacaaaaacaagcaaaaaaCACATGGGTCAAGTATGTGAAATGCTTTTGAATAATTGATTGATTACCAAGCGTGGAGTTTCATTGGTTTCCATTGTATCCAGCATGCTAATCTGCTGCTGAAGTATGAAGAACGTTGACATTTTGACCCAGCAGGTCTGGTTCAGAGTCCCGAAGTTACCGAAATCACACAGCTGCTCCTCCTCAGTCAGCCCTGTAATAGACAAATTATGCCATCTGTTGGCCAATGCATGAACTTACAACCCTGTATGGAATTTGTATTTTCTGAACTACATGAACTGATTGTGAAACAGGAAAGAAGCAGCATTCGTTGTTTAGTTGCACAGGTTTGCGAGTCAGCTATCCAATACTAGAACATAATAAATCAATGTGTGTCAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1743658 lncRNA downstream 12869 17670801 ~ 17671929 (-) True LOC110528763
TU1743671 lncRNA downstream 35509 17647976 ~ 17649289 (-) True G1522905
TU1743655 lncRNA downstream 42460 17640874 ~ 17642338 (-) False LOC110528763
TU1743668 lncRNA downstream 46483 17638097 ~ 17638315 (-) True G1522902
TU1743662 lncRNA downstream 61787 17622709 ~ 17623011 (-) True G1522896
TU1743607 lncRNA upstream 213 17685565 ~ 17687702 (-) False LOC118941106
TU1743608 lncRNA upstream 213 17685565 ~ 17687702 (-) False LOC118941106
TU1743711 lncRNA upstream 50231 17735583 ~ 17735789 (-) True G1522931
TU1743714 lncRNA upstream 63203 17748555 ~ 17748797 (-) True G1522934
TU1743727 lncRNA upstream 117266 17802618 ~ 17802841 (-) True G1522945
XM_021608603.2 mRNA downstream 204 17675207 ~ 17684594 (-) True LOC110527371
XM_021608602.2 mRNA downstream 232 17675207 ~ 17684566 (-) False LOC110527371
XM_036952081.1 mRNA downstream 12868 17641367 ~ 17671930 (-) False LOC110528763
XM_036952082.1 mRNA downstream 12868 17641367 ~ 17671930 (-) False LOC110528763
LOC110527378 mRNA downstream 51234 17630872 ~ 17633564 (-) True LOC110527378
XM_036952083.1 mRNA upstream 199 17685551 ~ 17702827 (-) False LOC118941106
XM_036952085.1 mRNA upstream 34152 17719504 ~ 17815003 (-) False LOC110510546
XM_036952087.1 mRNA upstream 157015 17842367 ~ 17861625 (-) False LOC110527386
XM_036952088.1 mRNA upstream 157015 17842367 ~ 17861866 (-) True LOC110527386
XM_036951027.1 mRNA upstream 234733 17920085 ~ 17938168 (-) False LOC100135945
TU1743656 other downstream 14839 17642418 ~ 17669959 (-) False LOC110528763
TU1743542 other downstream 234620 17441659 ~ 17450178 (-) True G1522794
TU1742514 other downstream 673420 17009382 ~ 17011378 (-) True LOC118941063
TU1742516 other downstream 742204 16937652 ~ 16942594 (-) True LOC110495686
TU1742232 other downstream 1265880 16418250 ~ 16418918 (-) True G1521712
TU1743609 other upstream 2578 17687930 ~ 17702753 (-) True LOC118941106
TU1743613 other upstream 56615 17741967 ~ 17744898 (-) True LOC110510546
TU1743823 other upstream 366628 18051980 ~ 18053825 (-) False LOC118941107
TU1743824 other upstream 366628 18051980 ~ 18053825 (-) False LOC118941107
TU1743827 other upstream 366628 18051980 ~ 18053825 (-) False LOC118941107

Expression Profile