RNA id: TU1743741



Basic Information


Item Value
RNA id TU1743741
length 201
lncRNA type intronic
GC content 0.53
exon number 1
gene id G1522957
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17807106 ~ 17807306 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGTGGCAGCCTaagctgtgtgccagtcagtcaCTCTCGTCTCAGACATATCCTCATCTCTACGGCTGAGCAGCCAACTGCAACgcaaggcaacacacacacacacacacacacacacacacacacacgctcaggaTTCAAGAGAAAGACTGTGGTGggacgaaagagagagagccagtCAGAGAGATAGAGGTAAGGAGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1743740 lncRNA downstream 641 17806041 ~ 17806465 (-) True G1522956
TU1743727 lncRNA downstream 4265 17802618 ~ 17802841 (-) True G1522945
TU1743714 lncRNA downstream 58309 17748555 ~ 17748797 (-) True G1522934
TU1743711 lncRNA downstream 71317 17735583 ~ 17735789 (-) True G1522931
TU1743607 lncRNA downstream 119404 17685565 ~ 17687702 (-) False LOC118941106
TU1743745 lncRNA upstream 3666 17810972 ~ 17811176 (-) True G1522961
TU1743746 lncRNA upstream 5052 17812358 ~ 17812571 (-) True G1522962
TU1743759 lncRNA upstream 31793 17839099 ~ 17839510 (-) True G1522974
TU1743730 lncRNA upstream 32262 17839568 ~ 17841541 (-) False G1522947
TU1743731 lncRNA upstream 32262 17839568 ~ 17841541 (-) True G1522947
XM_036952083.1 mRNA downstream 104279 17685551 ~ 17702827 (-) False LOC118941106
XM_021608603.2 mRNA downstream 122512 17675207 ~ 17684594 (-) True LOC110527371
XM_021608602.2 mRNA downstream 122540 17675207 ~ 17684566 (-) False LOC110527371
XM_036952081.1 mRNA downstream 135176 17641367 ~ 17671930 (-) False LOC110528763
XM_036952087.1 mRNA upstream 35061 17842367 ~ 17861625 (-) False LOC110527386
XM_036952088.1 mRNA upstream 35061 17842367 ~ 17861866 (-) True LOC110527386
XM_036951027.1 mRNA upstream 112779 17920085 ~ 17938168 (-) False LOC100135945
NM_001124289.1 mRNA upstream 112782 17920088 ~ 17937866 (-) False LOC100135945
XM_036951028.1 mRNA upstream 112795 17920101 ~ 17938169 (-) True LOC100135945
TU1743613 other downstream 62208 17741967 ~ 17744898 (-) True LOC110510546
TU1743609 other downstream 104353 17687930 ~ 17702753 (-) True LOC118941106
TU1743656 other downstream 137147 17642418 ~ 17669959 (-) False LOC110528763
TU1743542 other downstream 356928 17441659 ~ 17450178 (-) True G1522794
TU1742514 other downstream 795728 17009382 ~ 17011378 (-) True LOC118941063
TU1743823 other upstream 244674 18051980 ~ 18053825 (-) False LOC118941107
TU1743824 other upstream 244674 18051980 ~ 18053825 (-) False LOC118941107
TU1743827 other upstream 244674 18051980 ~ 18053825 (-) False LOC118941107
TU1743828 other upstream 244674 18051980 ~ 18053825 (-) True LOC118941107
TU1743984 other upstream 624787 18432093 ~ 18436052 (-) False G1523149

Expression Profile