RNA id: TU1743764



Basic Information


Item Value
RNA id TU1743764
length 206
lncRNA type intronic
GC content 0.38
exon number 1
gene id G1522979
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17852947 ~ 17853152 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tagttgttgtgctgacagaattaacattttcaaatatatcattatcagccaccactctatcttgaatctcccgcagttttattgcattgttgacaacaaccatgtcaacaatagcattttcctgcgcatctgaaaatatttttcctcttccccctgttgggggcagcctttgggtcctgttgtaaaaatatattttacagtcaaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1743761 lncRNA downstream 3173 17849465 ~ 17849774 (-) True G1522976
TU1743730 lncRNA downstream 11406 17839568 ~ 17841541 (-) False G1522947
TU1743731 lncRNA downstream 11406 17839568 ~ 17841541 (-) True G1522947
TU1743759 lncRNA downstream 13437 17839099 ~ 17839510 (-) True G1522974
TU1743746 lncRNA downstream 40376 17812358 ~ 17812571 (-) True G1522962
TU1743765 lncRNA upstream 415 17853567 ~ 17853769 (-) True G1522980
TU1743766 lncRNA upstream 1771 17854923 ~ 17855232 (-) True G1522981
TU1743776 lncRNA upstream 21456 17874608 ~ 17874824 (-) True G1522991
TU1743778 lncRNA upstream 26865 17880017 ~ 17880441 (-) True G1522993
TU1743780 lncRNA upstream 29825 17882977 ~ 17886755 (-) True G1522995
XM_036952085.1 mRNA downstream 37944 17719504 ~ 17815003 (-) False LOC110510546
XM_036952083.1 mRNA downstream 150120 17685551 ~ 17702827 (-) False LOC118941106
XM_021608603.2 mRNA downstream 168353 17675207 ~ 17684594 (-) True LOC110527371
XM_021608602.2 mRNA downstream 168381 17675207 ~ 17684566 (-) False LOC110527371
XM_036952082.1 mRNA downstream 181017 17641367 ~ 17671930 (-) False LOC110528763
XM_036951027.1 mRNA upstream 66933 17920085 ~ 17938168 (-) False LOC100135945
NM_001124289.1 mRNA upstream 66936 17920088 ~ 17937866 (-) False LOC100135945
XM_036951028.1 mRNA upstream 66949 17920101 ~ 17938169 (-) True LOC100135945
XM_036952089.1 mRNA upstream 86785 17939937 ~ 18012067 (-) False LOC110528772
XM_036952090.1 mRNA upstream 86785 17939937 ~ 18012067 (-) False LOC110528772
TU1743613 other downstream 108049 17741967 ~ 17744898 (-) True LOC110510546
TU1743609 other downstream 150194 17687930 ~ 17702753 (-) True LOC118941106
TU1743656 other downstream 182988 17642418 ~ 17669959 (-) False LOC110528763
TU1743542 other downstream 402769 17441659 ~ 17450178 (-) True G1522794
TU1742514 other downstream 841569 17009382 ~ 17011378 (-) True LOC118941063
TU1743823 other upstream 198828 18051980 ~ 18053825 (-) False LOC118941107
TU1743824 other upstream 198828 18051980 ~ 18053825 (-) False LOC118941107
TU1743827 other upstream 198828 18051980 ~ 18053825 (-) False LOC118941107
TU1743828 other upstream 198828 18051980 ~ 18053825 (-) True LOC118941107
TU1743984 other upstream 578941 18432093 ~ 18436052 (-) False G1523149

Expression Profile