RNA id: TU1743101


Basic Information

Item Value
RNA id TU1743101
length 321
lncRNA type intronic
GC content 0.45
exon number 1
gene id G1522459
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17855052 ~ 17855372 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctgttttcacagttcctaggctgtcacACAACTGTCACAACACTGTGGCATAACCCTCGCTACAATCCACAAACAGAAAAAGTAGTGATCATCTGTTATGTTAAGGAATGAGCTTTCACTGTCTGTTTCTATACTGCTAGCCACTCTAGACGTCAGGCTCACATTCAGGAAGGTGAACCCTACTGACTTGTATTATTACTCTAACTGTCAGAAAGGCATGGCTGTTCAACGCACTACATTTCTACGCTGGACACAGCCCACGTCTCAGGGAAGATTATGTCACAGCTACTggaaacaccacacacacccacacagatatA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1743100 lncRNA upstream 456 17854316 ~ 17854596 (+) True G1522458
TU1743099 lncRNA upstream 1799 17852865 ~ 17853253 (+) True G1522457
TU1743094 lncRNA upstream 6673 17847715 ~ 17848379 (+) True G1522452
TU1743093 lncRNA upstream 7408 17847344 ~ 17847644 (+) True G1522451
TU1743083 lncRNA upstream 8942 17845875 ~ 17846110 (+) True G1522441
TU1743081 lncRNA downstream 62 17855434 ~ 17856063 (+) True G1522439
TU1743102 lncRNA downstream 5436 17860808 ~ 17861861 (+) False G1522460
TU1743103 lncRNA downstream 5885 17861257 ~ 17861920 (+) False G1522460
TU1743104 lncRNA downstream 5885 17861257 ~ 17861861 (+) False G1522460
TU1743106 lncRNA downstream 6262 17861634 ~ 17861861 (+) True G1522460
XM_036952086.1 mRNA upstream 16035 17831450 ~ 17839017 (+) False LOC110528768
XR_002472840.2 mRNA upstream 138133 17715037 ~ 17716919 (+) False LOC110519433
XM_036951414.1 mRNA upstream 140016 17705378 ~ 17715036 (+) True LOC118936563
LOC110527382 mRNA upstream 214262 17638633 ~ 17640790 (+) True LOC110527382
XM_021608611.2 mRNA upstream 218468 17633638 ~ 17636584 (+) False LOC110527377
XM_036952101.1 mRNA downstream 187361 18042733 ~ 18053825 (+) True LOC110527394
XM_036952103.1 mRNA downstream 202330 18057702 ~ 18075184 (+) False LOC110528909
XM_036952105.1 mRNA downstream 202330 18057702 ~ 18075184 (+) False LOC110528909
XM_036952106.1 mRNA downstream 202330 18057702 ~ 18075184 (+) False LOC110528909
XM_036952104.1 mRNA downstream 209166 18064538 ~ 18075184 (+) True LOC110528909
TU1743076 other upstream 11038 17839669 ~ 17844014 (+) False G1522437
TU1743077 other upstream 11038 17839669 ~ 17844014 (+) False G1522437
TU1743079 other upstream 11038 17839669 ~ 17844014 (+) True G1522437
TU1743047 other upstream 88358 17766219 ~ 17766694 (+) True G1522415
TU1742927 other upstream 227408 17623816 ~ 17627644 (+) False LOC110527374
TU1743080 other downstream 769 17856141 ~ 17860614 (+) True G1522438
TU1743410 other downstream 523715 18379087 ~ 18380258 (+) True G1522684
TU1743460 other downstream 738962 18594334 ~ 18595600 (+) True LOC110495728
TU1744253 other downstream 860490 18715862 ~ 18718645 (+) True LOC118936474
TU1744394 other downstream 1104072 18959444 ~ 18974004 (+) True LOC110495746

Expression Profile