RNA id: TU1743143


Basic Information

Item Value
RNA id TU1743143
length 1820
lncRNA type antisense_over
GC content 0.40
exon number 3
gene id G1522487
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17938478 ~ 17940711 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCAGAAACAAAGAGGTCTATAGAGTTTTTATTTTAAAGACAGAGTCCAACAGTAGTGATCAGCAGTCTGTTCACCAGATTGAGAGAGTGATACACCCATCACCCatcacctctcacacacacacaaacacacacacacacacacacacacacaagttcaaTCAGCACAGCTCTTTATTGCTAACATTCTAAAATGCAACCTGCCTCCATAACAGTAAATCTATGTAATGACCATGAGCAGTCTGGAAGTTTAATTCCCAGACAAAAGTGTCACCCCCTACACTTGTTTGTAATTTGAGGGAGTGGGTCTCGGCGAATGTAATGTTTTTTGGATGAATGTGTTTGTAGTCACGAAATATACATCCAtgacccactcacacacacaccttaccgaACTGTTGCATTCTGGGTGACGGAGTTCTACAGCATTTGATTAAGGACAACAGCTTCAGATGTTCTCGTCTTTTGTTTTCAGAAATGCTAATGTATTTCATAAAAGCTCTTAAACATGgttcttttttaaataaattaagtTGTTTATGATGAACTGATCATGTTCAATCTAAGGACATAAGATGCTATCAAAGTGTTCAAATAAAATGGTAAACCAACAGAAAAGAGTGAACAAAACAACGGTAGATAAATCAGATGGCTTCATCATGCTAGGCACCGTACAAACAGGAAGGAGTCACAATCAGACCAGACCAATCAGGAGGGAGACAGCTTCACACAATAATTctttacacacagagacagataagacagacagacagacacagagtggTTCATTCTCAGACAATTCTCAAATGATTCTCAGTTGAGAATCAGGTTTTACTCTGGCATTTCAGCATAACATAAAACACACAAACTGAACGGCAGAAACTAGCAGTGTGCTGTGCAAGTTATCAAGCTCTTCACATTAAAATTCAAAAGTCATTTTAAAGTACCTAAATAAACAAGAAACAAAACTTGAACAATGTGTTATTTAAAAGACAGAATGAAAGCATATTTCTAGTAAACAGCAGAATGTTGTTATTCTTGTTTTGTTTTAGCAgttaatctgatgcagcaccttGAGAATTGAAAGACTTGGAggagatagagggacaggaggagaagaggagggagacagagggacaggaggagaagaggagggagatagaggcaAGGATTTTGTTTTAAAGGGACATAGCCGATATTTTAGAGAAgaggggtggagtggtggagaaaGAGGGGACGTTATTAAAGGTGAAGTGGAGGTGAGAAAGAAAGATTAGGATCCGGAAGTTCCGGTTCGTCTCCACAGACGGTAGTCGAGATCTTGGAAAACCAGGAACCAACGCCCCCGTTGATCCAAACACTCCTCTACCTTCAGACTCCTCTTCATAATAGTCATGTAtctctttattatttcattcttTATAGTCCTTCAAGTCTGTTACAGTGTTGTAGTCTCTCAGTGTTTCACTGTCTTCAAGTTTGATTCTCTCAGAGCCTGATTCATTTACACTTCAATTCTTTCACactgatttgatatttgattcTCTCAGCGTTCGAGTCATTCAGTGTTTGATTCTCTCAGTTTCGATTCAGTGTTGGACTCTCCTATTTTTCAATTCACTTCTTTGATTCAGGTCGCGATTTGATTCTCTTGGTCCATTGTTTTAATTGGCTTATGAAATTAGCCTTGGCCCGTGATGGACAGCTGAGCAGGCCAATGGGAAGACAGTGGGAGGGGTTAGTTTCACCAGTTCATCATGGAGCTACGGTTGAGGGTCATGAAGAAGACCTGACTGCTGCCTCCAGACCTCACTGACGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1743116 lncRNA upstream 5197 17921980 ~ 17933281 (+) False G1522466
TU1743115 lncRNA upstream 5297 17929055 ~ 17933181 (+) True G1522466
TU1743155 lncRNA upstream 17385 17920084 ~ 17921093 (+) True G1522498
TU1743154 lncRNA upstream 17724 17920084 ~ 17920754 (+) False G1522498
TU1743128 lncRNA upstream 49270 17885675 ~ 17889208 (+) False G1522477
TU1743240 lncRNA downstream 81347 18022058 ~ 18022281 (+) True G1522544
TU1743201 lncRNA downstream 188860 18129571 ~ 18136808 (+) True LOC110495694
TU1743310 lncRNA downstream 275929 18216640 ~ 18217776 (+) True G1522600
TU1743259 lncRNA downstream 284071 18224782 ~ 18231387 (+) True G1522563
TU1743312 lncRNA downstream 291179 18231890 ~ 18234662 (+) False G1522601
XM_036952086.1 mRNA upstream 99461 17831450 ~ 17839017 (+) False LOC110528768
XR_002472840.2 mRNA upstream 221559 17715037 ~ 17716919 (+) False LOC110519433
XM_036951414.1 mRNA upstream 223442 17705378 ~ 17715036 (+) True LOC118936563
LOC110527382 mRNA upstream 297688 17638633 ~ 17640790 (+) True LOC110527382
XM_021608611.2 mRNA upstream 301894 17633638 ~ 17636584 (+) False LOC110527377
XM_036952101.1 mRNA downstream 102022 18042733 ~ 18053825 (+) True LOC110527394
XM_036952103.1 mRNA downstream 116991 18057702 ~ 18075184 (+) False LOC110528909
XM_036952105.1 mRNA downstream 116991 18057702 ~ 18075184 (+) False LOC110528909
XM_036952106.1 mRNA downstream 116991 18057702 ~ 18075184 (+) False LOC110528909
XM_036952104.1 mRNA downstream 123827 18064538 ~ 18075184 (+) True LOC110528909
TU1743080 other upstream 77864 17856141 ~ 17860614 (+) True G1522438
TU1743076 other upstream 94464 17839669 ~ 17844014 (+) False G1522437
TU1743077 other upstream 94464 17839669 ~ 17844014 (+) False G1522437
TU1743079 other upstream 94464 17839669 ~ 17844014 (+) True G1522437
TU1743047 other upstream 171784 17766219 ~ 17766694 (+) True G1522415
TU1743410 other downstream 438376 18379087 ~ 18380258 (+) True G1522684
TU1743460 other downstream 653623 18594334 ~ 18595600 (+) True LOC110495728
TU1744253 other downstream 775151 18715862 ~ 18718645 (+) True LOC118936474
TU1744394 other downstream 1018733 18959444 ~ 18974004 (+) True LOC110495746
TU1744431 other downstream 1081294 19022005 ~ 19022395 (+) True G1523506

Expression Profile