RNA id: TU1743359


Basic Information

Item Value
RNA id TU1743359
length 285
lncRNA type intronic
GC content 0.49
exon number 1
gene id G1522640
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18261212 ~ 18261496 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgagagagagagaaagggagaggagaaagatagagagagagatcgtTTGGGGTTGGTTAAGAGTTGGTAACTTTGATTCACAGATCTCCCATAATACTTCAGCTGCTCATTGACTGGCCTCATTGTCGCTGTGACAGCACTGGGATCTGTGGTctctggaatgtgtgtgtgtgtgcgtgtgtgtgtgcgtgtgcttgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgatgagttaATAGCTGTCCTCAGTGGCCAATTTTCTCGCATACACTGGCCCTCTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1743358 lncRNA upstream 2061 18258930 ~ 18259151 (+) True G1522639
TU1743323 lncRNA upstream 16686 18244295 ~ 18244526 (+) True G1522606
TU1743322 lncRNA upstream 18862 18241264 ~ 18242350 (+) True G1522605
TU1743319 lncRNA upstream 20028 18239909 ~ 18241184 (+) True G1522604
TU1743314 lncRNA upstream 25031 18231890 ~ 18236181 (+) False G1522601
TU1743360 lncRNA downstream 316 18261812 ~ 18262056 (+) True G1522641
TU1743342 lncRNA downstream 34523 18296019 ~ 18298916 (+) True LOC110497069
TU1743411 lncRNA downstream 119186 18380682 ~ 18381894 (+) True G1522685
TU1743351 lncRNA downstream 131488 18392984 ~ 18411251 (+) True G1522632
TU1743436 lncRNA downstream 197195 18458691 ~ 18459237 (+) True G1522707
XM_036952115.1 mRNA upstream 37072 18194591 ~ 18224140 (+) True LOC110517300
XM_036952116.1 mRNA upstream 38557 18176721 ~ 18222655 (+) False LOC110517300
XM_021571108.2 mRNA upstream 102711 18156850 ~ 18158501 (+) True LOC110495710
XM_021571099.2 mRNA upstream 115731 18143136 ~ 18145481 (+) True LOC110495707
XR_005037393.1 mRNA upstream 124273 18131106 ~ 18136939 (+) False LOC110495694
XM_036952125.1 mRNA downstream 34927 18296423 ~ 18305237 (+) False LOC110497069
XM_036952126.1 mRNA downstream 36854 18298350 ~ 18305237 (+) False LOC110497069
XM_036952127.1 mRNA downstream 48485 18309981 ~ 18432516 (+) False LOC110495706
XM_036952128.1 mRNA downstream 48491 18309987 ~ 18432516 (+) False LOC110495706
XM_036952129.1 mRNA downstream 48665 18310161 ~ 18432516 (+) True LOC110495706
TU1743080 other upstream 400598 17856141 ~ 17860614 (+) True G1522438
TU1743076 other upstream 417198 17839669 ~ 17844014 (+) False G1522437
TU1743077 other upstream 417198 17839669 ~ 17844014 (+) False G1522437
TU1743079 other upstream 417198 17839669 ~ 17844014 (+) True G1522437
TU1743047 other upstream 494518 17766219 ~ 17766694 (+) True G1522415
TU1743410 other downstream 117591 18379087 ~ 18380258 (+) True G1522684
TU1743460 other downstream 332838 18594334 ~ 18595600 (+) True LOC110495728
TU1744253 other downstream 454366 18715862 ~ 18718645 (+) True LOC118936474
TU1744394 other downstream 697948 18959444 ~ 18974004 (+) True LOC110495746
TU1744431 other downstream 760509 19022005 ~ 19022395 (+) True G1523506

Expression Profile