RNA id: TU1743959


Basic Information

Item Value
RNA id TU1743959
length 1479
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G1523137
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18296479 ~ 18297982 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGCCTGCAGTTGCTGGAACGTCTTGATTCTCTTCTTGAAGCGCGAGGGCAGTACGAAGTCACAGCCCCGGGAGAGGAAGGCTAGCTCACATCTTAAATCAGGGTCCCCCCGCAGTGTCTCTTTAGACTCCTTGATAAACATGACGTTGATAGGAGAGGATGAAGATGACGATAGGAGAAGATGAAGATGATGATAGGAGAGGATGAAGATGACGATGagaggatgaagatgatgataggagaggatgaagatgaaGATGACGATGATAGGAGAGGATGAAGATGACGATGAGAGGATGAAGGTGACGTTGATAGGAGAGGATGAAGGTGACGATGATaggagaggatgaagatgatgataggagaggatgaagatgatgatAGGAGAGGATGAAGGTGACGATGATAGGAGAGGATGAAGGTGACGATGATAGGAGAGGATGAAGGAGACGATGATAGGAGAGGATGAAGGTGACGATGATAGGCGAGGATGAAGGTGACAATGATAGGAGAGGATGAAGGAGACGATGATAGGAGAGGATGAAGGTGACGATGACAGGAGAGGATGAAGGTGACGATGATAGGAGAGGATGAAGGAGACGATGATAGGAGAGGATGAAGGTGACGATGATAGGAGAGGATGAAGGTGACGATGATTACTTTATTGCATCCGTTTCTTAGGTAGCGGTTCAAAGTTCAAAGTTCATTCAGATTCCCAGCTGGTGTTGGAGGGTGCAGCAAAACCCCCTGAGAGACAGATGAACCACAGACCGGCCCTGGCGTAGAATTACAGACAGGACTACTAGACAACCAACAGCTCCATGGAGTCTACAGTCTATCTACAGACCACAGCTCTATACTTCTCTCTTCTTTTCAGTTGTTCACTCTCTCCATGCAATGGATTCCAGCTTTCTATTTCTTTTCTCCAAAGTATTTTATTCTCTCCATCCTGTCCAACGGAACGAGGGATGATTCCTTTCAGGTATCCAGGAGAACAGATTGAAGGAGACAAGAACAAAAAGAGTAACAGAATATATCGCAAAAGAAAAGAGTCCCCCAAGAGAAGAAAATGAGTCCACAGAGAAACGAAGGAAGATCCAACTGGACAGTGTTCCAGGTCGGTTCTGAGTCCACCTGCAGCTAGCTGGTTCTCACTCCATGTCtgctagtcacacacacacactcacactctttcTCAATCAAACTTTCCTGTTGCTTCACTTCCACACAAACACTCTCTAATATTGACAAATACTGTAGACCCACACTCAGACACACCTATATTTTCTCTCTCAGGGTTGAGTCCGTAGCTTATCCGTGTGTGTGCACTGATATATTTTCCGTGTGTTAGCTCCTAGCGTATCTTGTAAAACCATAGCGGCGGGCCAGCCGGTGGCTATACGTGGCCCAACAGAGTGCTTCTCTCTGGGGTATAAAAGTTCCCGTCTCCCCTGTGGTTCTCTGGTTCTACGGTATAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1743918 lncRNA downstream 38151 18253215 ~ 18258328 (-) True G1523102
TU1743938 lncRNA downstream 43448 18252697 ~ 18253031 (-) True G1523122
TU1743932 lncRNA downstream 56344 18239921 ~ 18240135 (-) True G1523116
TU1743931 lncRNA downstream 56794 18239150 ~ 18239685 (-) True G1523115
TU1743930 lncRNA downstream 57743 18238518 ~ 18238736 (-) True G1523114
TU1743976 lncRNA upstream 4520 18302502 ~ 18302840 (-) True G1523143
TU1743998 lncRNA upstream 20061 18318043 ~ 18318537 (-) True G1523160
TU1744145 lncRNA upstream 190718 18488700 ~ 18489891 (-) True G1523289
TU1744072 lncRNA upstream 254782 18552764 ~ 18554450 (-) True G1523230
TU1744172 lncRNA upstream 273087 18571069 ~ 18572942 (-) False G1523315
XM_036952123.1 mRNA downstream 58586 18231889 ~ 18237893 (-) True LOC110497068
XR_005037394.1 mRNA downstream 65055 18226310 ~ 18231424 (-) False LOC110495699
NM_001124594.1 mRNA upstream 147101 18445083 ~ 18447303 (-) False ghs-r
XM_036951415.1 mRNA upstream 201844 18499826 ~ 18513863 (-) True LOC110497072
XM_036952138.1 mRNA upstream 297802 18595784 ~ 18603170 (-) True LOC118941108
XM_036952139.1 mRNA upstream 306615 18604597 ~ 18617046 (-) True LOC110495729
XM_036952140.1 mRNA upstream 331109 18629091 ~ 18643487 (-) True LOC110497079
TU1743823 other downstream 242654 18051980 ~ 18053825 (-) False LOC118941107
TU1743824 other downstream 242654 18051980 ~ 18053825 (-) False LOC118941107
TU1743827 other downstream 242654 18051980 ~ 18053825 (-) False LOC118941107
TU1743828 other downstream 242654 18051980 ~ 18053825 (-) True LOC118941107
TU1743613 other downstream 551581 17741967 ~ 17744898 (-) True LOC110510546
TU1743984 other upstream 134111 18432093 ~ 18436052 (-) False G1523149
TU1743986 other upstream 134111 18432093 ~ 18436052 (-) False G1523149
TU1743987 other upstream 134111 18432093 ~ 18436052 (-) True G1523149
TU1744124 other upstream 147605 18445587 ~ 18446561 (-) True ghs-r
TU1744079 other upstream 243163 18541145 ~ 18541711 (-) True G1523234

Expression Profile