RNA id: TU1743987


Basic Information

Item Value
RNA id TU1743987
length 3691
RNA type TUCP
GC content 0.45
exon number 3
gene id G1523149
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18432093 ~ 18436052 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAATTGGCTTGTAAAGTACTGTATGCAAATATTCTATTGTATATAAATAAAGGTATAGAACCAATAGAGAAATTGTAGCGTAACTTTCCCATCGACTTTGGCAAAGGTGTTGGAGCAGTTAAAGGCTCTGCTAACTGACGAGTAGGAGCGAAGcacagcttagagagagagagagtgggatgataacagtaggagtgaagcacagcttagagagagagagagggatgataacagtaggagtgaagcacagcttagagagagagagagggatgataacagtaggagtgaagcacagcttagagagagagagagggatgataacagtaggagtgaagcacagcttagagagagagagggatgataacagtaggagtgaagcacagcttagcgagagagggatgataacagtaggagtgaagcacagcttagagagagagagagggatgataacagtaggagtgaagcacagcttagagagagagagggatgataacagtaggagtgaagcacagcttagagagagagggatgataacagtaggagtgaagcacagcttagagagagagagagggatgataacagtaggagtgaagcacagcttagagagagagggatgataacagtaggagtgaagcacagcttagagagagagagatgataacagtaggagtgaagcacagcttagagagagagagagagatgataacagtaggagtgaagcacagcttagagagagagagagggatgataacagtaggagtgaagcacagcttagagagagagagagggatgataacagtaggagtgaagcacagcttagagagagagagagggatgataacagtaggagtgaagcacagcttagagagagagagagggatgataacagtaggagtgaagcacagcttagagagagagagagggatgataacagtaggagtgaagcacagcttagagagagagagagggatgataacagtaggagtgaagcacagcttagagagagagggatgataacagtaggagtgaagcacagcttagagagagagagagggatgataacagtaggagtgaagcacagcttagagagagagagatgataacagtaggagtgaagcacagcttagagagagagagagggatgataacagtaggagtgaagcacagcttcgagagagagagatgataacagtaggagtgaagcacagcttagagagagagagatgataacagtaggagtgaagcacagcttagagagagagagagatgataacagtaggagtgaagcacagcttagagagagagggatgataacagtaggagtgaagcacagcttagagagagagagagggatgataacagtaggagtgaagcacagcttagagagagagagagagatgataacaGTAGAAGTGAAGCAcagcttagagagagagggatgataacagtaggagtgaagcacagcttagagagagagagatgataacagtaggagtgaagcacagcttagagagagagagagggatgataacagtaggagtgaagcacagcttagagagagagagatgataacagtaggagtgaagcacagcttagagagagatgataacagtaggagtgaagcacagcttagagagagagatgataacagtaggagtgaagcacagcttagagagagagagagagatgataacagtaggagtgaagcacagcttagagagagagagatgataacagtaggagtgaagcacagcttagagagagagagagagagagagagtgggatgataaCAGCattaattagagagagagagagtgggatgataaCAGCATTAAttagagagacggagggagagggagggaggttagaaacgaggaggggagggagacgtACTGAGAATGGCGGAGGGATAGAAAAAGAGAGCGGAGGCAGAGAAAAAAGAAGGGTATGAATAGGTATGAGGGTTGAGTGGGGGCAGGGGGCGGATAAAAGGTTACTTCAGTAACCTCTACATTCGACAGCGGGGACTGGCTACTGAACTGACCTCAGATCTGCAGGTGAGCACCTAGAATACATATTATAATTCACTAAACCACTCCCAGTGGAATATACCAGGTTATCCCTAGACCAGGGGTGTCAGGTCCAGTTCTCacaggtcaaagtgtcatcatgtttTTATCAACCTCAAACTAAATTGATCAACTGTTGTTGCTGGTTGGCTAGATATGGCCAGGTGTGTGGCCCTCCAGGAGCCTGGTTTTACACCCTTGCCCTAAACTGATCTAAAGTCAGCTTTGCATTTCCCACTCCTAAGGGTTTAGGTTAGCTTCAGGGGAGAGAaagctggtcctagatctgtggttaaaagGCAACATCTACCTGgatccctcctctttctctctgtcattcaGACCTCTACACTTCTTATATTACATCATAGCATCGCCCCTACAGATATAGATAGGTAGATCTATCTTAGATATATTTGATATAGATTGTATATATTAGGTAACTAAATCCATTCTTTCTCAGATATAACGAAACAGGATAGCAGCATTTTTTAACAATGGCATCGCTTTGGTAGCTGAATAAAGAAGACAGAAGAGAAGGcatctgagtgagtgtgtgtgtttctgtctctctgtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtttgtctcgcTGTGCATctgcatgtgtttctgtgtgtctgtgtctatgtgtctgtgtgtgcatctgtgcatCAAGATTGCATGATTTGGCCTATAATAGACAAGGTAACAGATATTGAAGAATACATGGCTAAAGCTTGAGAACTACATTTCAAAATGGCACAACGGAAAGAAACTACAAAAGACTGCAGCGAACAGCGCAAATAGGACACAGACACAGTAAAGTAAGGAATTGACTGTAAAGAAATATAAAGAAAAGCACACTTTGTCTATTAGGTTTAAAAAGATACAAAATAATGTCATGCGGGTCATTGAGGAGCTTTACTGGGCTCCTGGCTGGCTAATGCTTGGTTATCAGTTTGTTTGTTCTGGCCACGAACAGCTTCCCTCCAAAATACATCCATTACATAAGATAGAGAGACCAAACTAACAATgacaagagaaacagagagagcgagcgagcgagagagagggaaagagagagaggagagaggggagagagaagaggaaagagatagGTGGACAACGGCACGGTAGAATAACTGAAGTACAGCTCAGGTCTGTTTCGTTTGAAGTCTGTTTCCTCTCTCGCTTTTTTTCTCTTTCTATCCTGCACTTGATTCTCAAGTGTTTGTTTTCTTTCCTTTCTTTAGTAGATGCTCGTTTTCTTTCGCTATCGCTTTGTTTTCTCTTTTCTATCCTGTTGCCGATTCATTCCCTCACTTCATGAAGAAGTATTGTAGCAGACAGGCCATGAGGATGGAGACACCGGCGAACACACACACCACGACCGCCGCAAAGCGCTCATCGCTGGATATTATCCCCGCCCCTTTCACCGTCTCCACGGCGCTGGTCTCCCCCAGGCACTGTTGCTCCTGACGACGCAGGGTGAACGGGGAGGAGGGGCTTTGAGGGCCACAGAGTTCCTGGTTGGTATCCTGGCAACGGCGGCAGGCGCACACACGGAAACGGTAGTCGGTGTTGCCTTGGAGCCCGGTGATTTGGAAGGCACTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1743998 lncRNA downstream 113556 18318043 ~ 18318537 (-) True G1523160
TU1743976 lncRNA downstream 129253 18302502 ~ 18302840 (-) True G1523143
TU1743956 lncRNA downstream 134111 18296479 ~ 18297982 (-) False G1523137
TU1743959 lncRNA downstream 134111 18296479 ~ 18297982 (-) True G1523137
TU1743918 lncRNA downstream 173765 18253215 ~ 18258328 (-) True G1523102
TU1744145 lncRNA upstream 52648 18488700 ~ 18489891 (-) True G1523289
TU1744072 lncRNA upstream 116712 18552764 ~ 18554450 (-) True G1523230
TU1744172 lncRNA upstream 135017 18571069 ~ 18572942 (-) False G1523315
TU1744173 lncRNA upstream 136379 18572431 ~ 18572942 (-) True G1523315
TU1744148 lncRNA upstream 139624 18575676 ~ 18579183 (-) True G1523291
XM_036952123.1 mRNA downstream 194200 18231889 ~ 18237893 (-) True LOC110497068
XR_005037394.1 mRNA downstream 200669 18226310 ~ 18231424 (-) False LOC110495699
NM_001124594.1 mRNA upstream 9031 18445083 ~ 18447303 (-) False ghs-r
XM_036951415.1 mRNA upstream 63774 18499826 ~ 18513863 (-) True LOC110497072
XM_036952138.1 mRNA upstream 159732 18595784 ~ 18603170 (-) True LOC118941108
XM_036952139.1 mRNA upstream 168545 18604597 ~ 18617046 (-) True LOC110495729
XM_036952140.1 mRNA upstream 193039 18629091 ~ 18643487 (-) True LOC110497079
TU1743823 other downstream 378268 18051980 ~ 18053825 (-) False LOC118941107
TU1743824 other downstream 378268 18051980 ~ 18053825 (-) False LOC118941107
TU1743827 other downstream 378268 18051980 ~ 18053825 (-) False LOC118941107
TU1743828 other downstream 378268 18051980 ~ 18053825 (-) True LOC118941107
TU1743613 other downstream 687195 17741967 ~ 17744898 (-) True LOC110510546
TU1744124 other upstream 9535 18445587 ~ 18446561 (-) True ghs-r
TU1744079 other upstream 105093 18541145 ~ 18541711 (-) True G1523234
TU1744093 other upstream 125854 18561906 ~ 18567247 (-) True G1523241
TU1745358 other upstream 313073 18749125 ~ 18749395 (-) True G1524311
TU1745534 other upstream 707933 19143985 ~ 19164126 (-) True G1524473

Expression Profile