RNA id: TU1743356


Basic Information

Item Value
RNA id TU1743356
length 391
lncRNA type sense_over
GC content 0.49
exon number 2
gene id G1522637
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18463922 ~ 18472624 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctctctctctctctgtctctctctctctctctctctctgtctctctgtcataaCTGCAATATCACGTTAGCTAATATAATAGGAACGTTGGAATTGGCCCatacaccatctctctctctctctctctctctctgtctcgctctctctctctctctctctctgtctctctctctctctctctgtctctctctctctctctctctctctgtcgctctctctctctgtcgctctctctctctctctctctgtcgctctctctctctgtcgctctctctctctctgtctctctctctctcgtctctctgtcaTAACTGCAATATCAcgttagctacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1743436 lncRNA upstream 4685 18458691 ~ 18459237 (+) True G1522707
TU1743351 lncRNA upstream 52671 18392984 ~ 18411251 (+) True G1522632
TU1743411 lncRNA upstream 82028 18380682 ~ 18381894 (+) True G1522685
TU1743342 lncRNA upstream 165006 18296019 ~ 18298916 (+) True LOC110497069
TU1743360 lncRNA upstream 201866 18261812 ~ 18262056 (+) True G1522641
TU1743446 lncRNA downstream 156 18472780 ~ 18473999 (+) True G1522716
TU1743344 lncRNA downstream 10571 18483195 ~ 18484626 (+) True tspan37
TU1743465 lncRNA downstream 29101 18501725 ~ 18502232 (+) True G1522725
TU1743444 lncRNA downstream 68534 18541158 ~ 18541702 (+) True G1522714
TU1743443 lncRNA downstream 69694 18542318 ~ 18544024 (+) True LOC110495722
XM_036952127.1 mRNA upstream 31406 18309981 ~ 18432516 (+) False LOC110495706
XM_036952128.1 mRNA upstream 31406 18309987 ~ 18432516 (+) False LOC110495706
XM_036952129.1 mRNA upstream 31406 18310161 ~ 18432516 (+) True LOC110495706
XM_036952125.1 mRNA upstream 158685 18296423 ~ 18305237 (+) False LOC110497069
XM_021571100.2 mRNA downstream 8153 18480777 ~ 18484624 (+) False tspan37
XM_021571101.2 mRNA downstream 8153 18480777 ~ 18484624 (+) False tspan37
XM_021571102.2 mRNA downstream 8153 18480777 ~ 18484624 (+) False tspan37
XM_021571103.2 mRNA downstream 8153 18480777 ~ 18484624 (+) False tspan37
XM_021571104.2 mRNA downstream 8153 18480777 ~ 18484624 (+) False tspan37
TU1743410 other upstream 83664 18379087 ~ 18380258 (+) True G1522684
TU1743080 other upstream 603308 17856141 ~ 17860614 (+) True G1522438
TU1743076 other upstream 619908 17839669 ~ 17844014 (+) False G1522437
TU1743460 other downstream 121710 18594334 ~ 18595600 (+) True LOC110495728
TU1744253 other downstream 243238 18715862 ~ 18718645 (+) True LOC118936474
TU1744394 other downstream 486820 18959444 ~ 18974004 (+) True LOC110495746
TU1744431 other downstream 549381 19022005 ~ 19022395 (+) True G1523506
TU1744469 other downstream 653640 19126264 ~ 19130785 (+) True G1523526

Expression Profile