RNA id: TU1744093


Basic Information

Item Value
RNA id TU1744093
length 5235
RNA type TUCP
GC content 0.41
exon number 3
gene id G1523241
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18561906 ~ 18567247 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAGTCGATATGATCATTTCTTCATATACATAATATCTTATAGTTAGGATGCATTGCCACAGTACATTATAGTTGGAAGACTATTGCTAGAATAAATAGCTAGAATAATAATTCATTATAATAACAACTatcttaaaaataaaataataaaaatgtctATACATGATCATTATGTTAAAAAAAAggacaaaacaaaaatgtttacAAAAACAAGAGATTAAAAACAGTTACACTTTTCAAACCAAAGCCATTATTAATGcagaataattataataataaaatacaaaatatgttCATTTCACAGTTTGCATCCTTATTGGTTCTCATGCTGGCTGGGAGCAACACTTATTGTGGCCATGCagggagggaaggacagagatgGAGGTTAGTAGAACCACACTACCCAGAAGTCATTGCACCCCCCAGAGGCCCGGTCCAGAAACAACTTCGAGGcacttccacattttgtgtttGGCAGAGCAGACAAGTGTAAACAATATGGCGGAAGTTCCCTAAAGCCTAATAGTTAACCCTGTCCCCTATCCAGTCCCTTCAGATATTTGAACTTCTAGGGGCAAGAAGTTGTTTTTGGGCTGATAGTATGATCTGGGGTGATGCAAAAATTCCAAACTGTGTCCTTGGTAGGCTTGAGTTTATAGAACATGTTTCTGATTAACTACACTCAATGAACTACTCTTCCCATAGTCCTTTGTGCCACTTCTCTTCTGCAACATGACCAGTACCCAGTTTCCAGCAACATGACTTTCTGATAACACACATCAGTGAAAGGCTGTAGGGGCTTTTTCAGGTAGAAACTACATAGAACAGACAACTCTGGCTTGTATAATCTATTCTAGAATCATATCAGCTCTGTTGTGTGTTTCTATCTTGGTTTTGATTCAGCCATACAGCAGCCTCTTTGTCCATTCCTGAGTCATTATAGGAATGCTCTTTGAACCCATTCGTAACTTGACATACAGCAAAATCAGACTTCATGTAAATCATGTTATTGATATATTTGTGAGGAAAGTAGTTGTGTGTGTGGATCTCAAGACAGGATCCAGCACTCTAAACTACACACGTGAAAAAAAAGAAACCCTCCCATTGGTTCATCTCTGGAGGACTCCGCCCATTTGGGCTCTGGCCAGTCCCCCAGGTGCTCATCCAATGAGGTGAGAGATCTTCCTCAGTGCCCATCCCTTCTCTGATTCTAATAACATACTGTGGAATCACAGTTGGCAGCTCTACCTTCACTCCTAAGAGAACCACACTACCCACAATCCTTTGAAGAGGGCCATGATGTCACCATTCCCTAACGTTCCTAAATCCTCTATCGGGTCTATATTATATAGTTATCTACAGATGTGGAGTGAAGGGAGTGGTAAAACTAATAGGAGGTGTACAACAGACGGGTTACAGGGTGACACAGCAGTGCAGAAAAACAGACAATGTCCAAATCTcacaacaccctattccctatgtagtgcactactttgaccagaatCACATGGGATCAGGGGATAAGGTAACGCATGAGACGCAGGTAATGAGGTTTCTGTGGCACAAAGGACTGCTCGCTGTTTGATTGGTATGCCTGTGTATTTATAtatctgtgtactgtatgtgtgtgtgtgtgtgtacacgcagTGGTGTTAAGTACTTAAGTACAAATATTTTAAAGTATTACTTCAGTagtttttttgggtatctgtactttactatttttgacaaattttactttactacattcctaaagaaaatgtactttttactccttacatacATACTCcatacacccaaaagtacttgttacatgtgtgcttagcaggacaggaaaattgtcaaattcacacgcacttatcaagagaacacatggtcatccctactgcctctgatctggcagactcactaaacacaaatacgttgtttgtaaatgatgtctgtacatgttaaaaacaagaaaacagtgccatctgctttgcttaatataaggaatttgaaattatttatacttttactacttaagtatatttgaccAAGTCCActgacttttgatacttaagtatatttagaacaaaatacagacttttactcaagtagtattttactgggtgactttcacttgagtaactttctattgaagtatctgtacttttactcaagtatgaaaattgggtactttttccaccactgtgtgtgCATGAGCCTGAGCAGTCTGACTCATGCAGAACGTGTGGGTCATCTCCACAGGGAACCTCTGACCGACActtcataaaacacacacacacacacactattggcCTTTGGCAGATGCAATGAGACCAGTTGTGGGAGGATGGGGTAGAGGCGTCTGTGCTGATTCAATcttacactgtacacacacacacacacacacacacacacacacaccacatagtAGTTTGATACTATTTGATGTAAAATATTTCACGTAATTCACTAAATGTGGGTTATGTCAATCTGATCTGAATAATAGATGACTGTATACTATATTATAGTTCTAGTGTAATACTGCACTAGAACACTGTTTCCTAATCAGATCCAGGACCTTTTCCTGAGCATGTGATCTGAACAGGAACAACCCTTAGCCTTAGCTATAGCCTACAACTGGGGATCAACGTTTTCCTGGTCAGGGCATGAGGTCAGGAAAACATTTGGGCCATAAGTATAACACAGCACATAGCAACACAACGTACCTTCTCAATACTCTATACACAGTGATGGAGACCATTCCCTTTCTAATTCAGTCTATTCAATTTGCCCATTGTATTTCCAATGACAGAGTTTTCGTTTTATGAACAGAATTTCAATTAATATTCCGAATTGAAAATTAAATCCCTGGTTGAAACTCTAATCAATTCCGTGCTTCTTTTTTAGAGAGATATGAAGTGGggtaccctatatagtgcattactttagatcAGAGCATATGGGCTCTGGTCCCCCCAAAAAAgagtgcactaaatagagaatagggtgccatttgcgatgcAGCTTAACCTTTTTGTCTGCTTTGTTACAATACCGTGCTATATAACCAACCCACAGCCTTATGGTGCTCTTTCACACGTTTAAATACTGTACACATTACAAGTCACCTGGAATAATGACTACAGGAGAGCTgctccctccttcctccacctctGTTCAAAATATATTGGCTGTCATTTATTCTGCAAGATAGATAACGGAACAtggtaaaacaaaaacacaacgTCAATCAAATGATTGTGCTTTTAGCTCTCCTGTATAGTAAGTAGGATGACTTTGTCCATAaatgctgatctaagatcagttttgcATTTACCCCCTAATGGTTAAAGTTATTATTTGGGGAgtacagaatatatatatatattctgtacTTTGACAAACAACCTTATTGCTTTACATAAACCAATAGAGGTGTTTGGGACAATAATATAATTACATCACTCCTTTTTCATGTACATACTATGTAGGAATACACTTGGTGAATGACCACTGGTCTCCAAAaagcatgtgcgtgtgtgtgcatttatatgtgtgtgtgtgtgtgtgtgtgtgacattaagTGCAATGTGATGGTATTTGCATGGCATAAAACTAATCGAGTGTCTTCCCTCCGTCGAGTAGAGTCGTCACTCCATCCTCTCTGTGCTTCTCTGTGTACGAAGAGGATTCAGCAgcttggcatgggaaacacaagGCCAACAGAAAGGCTCCTCACATGAAACAACAAGGGCCAAAGCCAACCGACGCAAACATTCCCAGCGACATCATCCGCAATATTCCCAGTCCAAATCCCACAGTATTCCCAGTCCAAATCCCACAGTATTCCCAGTCCAAATCCCACAGTATTCCCAGTCCAAATCCCACAGTATTCCCAGTCCAAATCCCACAGTATTCCCAGTCCAAATCCCACAGTATTCCCAGTCCAAATCCCACAACCACCTTTTCTAATACCTCTTCACATGTTCCAAGTCCACTCCAAACGTTTCAAGTCCATCGTCCATCCAACCAAAGTCCAACTACCAAGTGTCTCAGGTAGACTTCTTAACATTTCAGTCCAACTACCAAGTGTCCCAGGTAGACTTCTTAACATTTCAGTCCAACTACCAAGTGTCCCAGGTAGACTTCTTAACATTTCAGTCCAACTACCAAGTGTCCCAGGTAGACTTCTTAACATTTCAGTCCAACTACCAAGTGTCCCAGGTAGACTTCTTAACATTTCAGTCCAACTACCAAGTGTCCCAGGTAGACTTCTTAACATTTCAGTCCAACTACCAAGTGTCCCAGGCAGACTTCTTAACATTTCAGTCCAACTACCAAGTGTCCCAGGCAGACTTCTTAACATTTCACTCCAACTACCACATCTTTCTTTCCCAGGTTCTCTTTCCTCTGATTCCAAGTCAGACGTGAACTACTGCCCTTCCCTTGTTTTAACACTGAGCTAAAGTCTTAGAGGGATTGTTGATGGCACAAGTTCAGCGTTTCTCCAGTTCAAGTAATGATTTCGATCCATTTTGAAGCCACTTGAATGAGGAGTTAAGAGGATTCTTCATTTTGCATGATGACAGAGACGGTTAGGGGGGTATTACTGTCTGTGTCTTTCAGAGGTGCTAGGGAGGGAGGTCATGTATTCATAGGATATGTACATTATGTTGGAGTGTCCCTAGTGTAACATCTAGTGACCTCGCCAAGAGGTTGGGACCTCACGGCGTGATGGCTGAGGTGTTGGACTGATGCTGACAGATGCAGGGTTTGAGTCGTCTTcagactaccccccccccccaaatatttTCACTACAGTGGGACTGTATGGAGGGTTAGGAACCTGGTCAGGTAGACAGGAGACGAGAGAGGATACTGAGAGGGTGAGGTATAGAACCCACCAGTGGTCCTCTCTTCACTCTTCTccgtctctcttctcttcctctccccctcttctgttCGTCTTTTATCCTCTCACTTTCTGTCTTCCTTGtgacctccttccttccttccctccctccctccctctctctctctcctctcctctcctctcctctcctctacatgaCACTACATTTTCCCTTCAGTCTCTCAGCTCTGGACTGTTTTCCGGACCGTTTCCCGTCGATGTTGAGACTCATGTTTCTCTTCTTGTCCAGGTTGAGCAGCTCCTGGAACAGCTCGGTCACGTTGTGGTTGGTCTTAGCTGACGTCTCCATGAACGCACACTTCCACGTGGTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1744072 lncRNA downstream 7456 18552764 ~ 18554450 (-) True G1523230
TU1744145 lncRNA downstream 72015 18488700 ~ 18489891 (-) True G1523289
TU1743998 lncRNA downstream 243369 18318043 ~ 18318537 (-) True G1523160
TU1743976 lncRNA downstream 259066 18302502 ~ 18302840 (-) True G1523143
TU1743956 lncRNA downstream 263924 18296479 ~ 18297982 (-) False G1523137
TU1744172 lncRNA upstream 3822 18571069 ~ 18572942 (-) False G1523315
TU1744173 lncRNA upstream 5184 18572431 ~ 18572942 (-) True G1523315
TU1744148 lncRNA upstream 8429 18575676 ~ 18579183 (-) True G1523291
TU1744199 lncRNA upstream 42917 18610164 ~ 18611225 (-) True G1523333
TU1744212 lncRNA upstream 56222 18623469 ~ 18623969 (-) True G1523341
XM_036951415.1 mRNA downstream 48043 18499826 ~ 18513863 (-) True LOC110497072
NM_001124594.1 mRNA downstream 114603 18445083 ~ 18447303 (-) False ghs-r
XM_036952123.1 mRNA downstream 324013 18231889 ~ 18237893 (-) True LOC110497068
XR_005037399.1 mRNA downstream 330482 18227298 ~ 18231424 (-) False LOC110495699
XM_036952138.1 mRNA upstream 28537 18595784 ~ 18603170 (-) True LOC118941108
XM_036952139.1 mRNA upstream 37350 18604597 ~ 18617046 (-) True LOC110495729
XM_036952140.1 mRNA upstream 61844 18629091 ~ 18643487 (-) True LOC110497079
XM_021571128.2 mRNA upstream 183522 18750769 ~ 18764433 (-) True LOC110495732
XM_021571137.2 mRNA upstream 296289 18863536 ~ 18874393 (-) False LOC110495738
TU1744079 other downstream 20195 18541145 ~ 18541711 (-) True G1523234
TU1744124 other downstream 115345 18445587 ~ 18446561 (-) True ghs-r
TU1743984 other downstream 125854 18432093 ~ 18436052 (-) False G1523149
TU1743986 other downstream 125854 18432093 ~ 18436052 (-) False G1523149
TU1743987 other downstream 125854 18432093 ~ 18436052 (-) True G1523149
TU1745358 other upstream 181878 18749125 ~ 18749395 (-) True G1524311
TU1745534 other upstream 576738 19143985 ~ 19164126 (-) True G1524473
TU1745684 other upstream 1006381 19573628 ~ 19577100 (-) True LOC110495764
TU1745849 other upstream 1155498 19722745 ~ 19730068 (-) False G1524755
TU1745850 other upstream 1156187 19723434 ~ 19725531 (-) True G1524755

Expression Profile