RNA id: TU1744173


Basic Information

Item Value
RNA id TU1744173
length 482
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G1523315
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18571069 ~ 18572942 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcGGATGGTGTGCAGATCGGAGGGCCAGTCTGCACCAAGGGCCAGACAGGTGTGTGTTGGGTTGGTAGCCAGGTGTACCAGGTAGGGCAGGTGTGTGTTGGGTTGGTAGACTGGTGTACGTGGTAGGGCAGGTGTGTGTGCAGGGAAAGGACTGATGAGGTGAGTTGGGTCACTCAGCTGGACAGAAGTGGTTGTGACCTCAGGTCAGATGGACAGGAGTGGTTGTGACCTCAGGTCAGATGGTCAGCTGTAAACCTTCACCTCCTGCAGAGTAGAAGTTTCACATTATTAATATCACATGCACAGTACAGTGAAATAGCTTTCTTGCagactcaaaacccaacaatgcgataatcaataacaatgtaatactagaaaaaaaaacacacgAGAAATAAGAAGAAATATGGAGAACACAATAAGTAAGTAAACATActttatacagggtcagttccaataccatatttacaatgagcagggat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1744072 lncRNA downstream 17981 18552764 ~ 18554450 (-) True G1523230
TU1744145 lncRNA downstream 82540 18488700 ~ 18489891 (-) True G1523289
TU1743998 lncRNA downstream 253894 18318043 ~ 18318537 (-) True G1523160
TU1743976 lncRNA downstream 269591 18302502 ~ 18302840 (-) True G1523143
TU1743959 lncRNA downstream 274449 18296479 ~ 18297982 (-) True G1523137
TU1744148 lncRNA upstream 2734 18575676 ~ 18579183 (-) True G1523291
TU1744199 lncRNA upstream 37222 18610164 ~ 18611225 (-) True G1523333
TU1744212 lncRNA upstream 50527 18623469 ~ 18623969 (-) True G1523341
TU1744211 lncRNA upstream 52221 18625163 ~ 18625642 (-) True G1523340
TU1744215 lncRNA upstream 53180 18626122 ~ 18626391 (-) True G1523342
XM_036951415.1 mRNA downstream 58568 18499826 ~ 18513863 (-) True LOC110497072
NM_001124594.1 mRNA downstream 125128 18445083 ~ 18447303 (-) False ghs-r
XM_036952123.1 mRNA downstream 334538 18231889 ~ 18237893 (-) True LOC110497068
XR_005037399.1 mRNA downstream 341007 18227298 ~ 18231424 (-) False LOC110495699
XM_036952138.1 mRNA upstream 22842 18595784 ~ 18603170 (-) True LOC118941108
XM_036952139.1 mRNA upstream 31655 18604597 ~ 18617046 (-) True LOC110495729
XM_036952140.1 mRNA upstream 56149 18629091 ~ 18643487 (-) True LOC110497079
XM_021571128.2 mRNA upstream 177827 18750769 ~ 18764433 (-) True LOC110495732
XM_021571137.2 mRNA upstream 290594 18863536 ~ 18874393 (-) False LOC110495738
TU1744093 other downstream 5184 18561906 ~ 18567247 (-) True G1523241
TU1744079 other downstream 30720 18541145 ~ 18541711 (-) True G1523234
TU1744124 other downstream 125870 18445587 ~ 18446561 (-) True ghs-r
TU1743986 other downstream 136379 18432093 ~ 18436052 (-) False G1523149
TU1745358 other upstream 176183 18749125 ~ 18749395 (-) True G1524311
TU1745534 other upstream 571043 19143985 ~ 19164126 (-) True G1524473
TU1745684 other upstream 1000686 19573628 ~ 19577100 (-) True LOC110495764
TU1745849 other upstream 1149803 19722745 ~ 19730068 (-) False G1524755
TU1745850 other upstream 1150492 19723434 ~ 19725531 (-) True G1524755

Expression Profile