RNA id: TU1743506


Basic Information

Item Value
RNA id TU1743506
length 246
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1522765
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18626593 ~ 18626838 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCTCTTTGACCTCTGAACATCACTTCAGTTCTATATCCAGTTTGCTATTCTCTTTGACCTCTGAACATCACTTCAGTTCTATATCCAGTTTGCTATCCTCTTTGACCTCTGAACATCACTTCAGTTCTATATCCAGTTTGCTATCCTCTTTGACCTCTGAACATCACTTCAGTTCTATATCCAGTTTGCTATTCTCTTTGACCTCTGAACATCACTTCAGTTCTATATCCAGTTTGCTATTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1743505 lncRNA upstream 163 18626154 ~ 18626430 (+) True G1522764
TU1743504 lncRNA upstream 872 18625309 ~ 18625721 (+) True G1522763
TU1743451 lncRNA upstream 4527 18570769 ~ 18622066 (+) False LOC110495726
TU1743528 lncRNA downstream 24509 18651347 ~ 18672714 (+) True LOC110495730
TU1744241 lncRNA downstream 49418 18676256 ~ 18676471 (+) True G1523367
TU1744249 lncRNA downstream 75451 18702289 ~ 18722091 (+) False LOC118936474
TU1744278 lncRNA downstream 119392 18746230 ~ 18747146 (+) True G1523388
TU1744280 lncRNA downstream 122597 18749435 ~ 18749865 (+) True G1523390
XM_021571119.2 mRNA upstream 30911 18594324 ~ 18595682 (+) False LOC110495728
XM_036952133.1 mRNA upstream 39314 18580582 ~ 18587279 (+) False LOC110495727
XM_036952141.1 mRNA downstream 29676 18656514 ~ 18672724 (+) False LOC110495730
XM_036952144.1 mRNA downstream 50287 18677125 ~ 18683024 (+) False LOC110495731
XM_036952143.1 mRNA downstream 50288 18677126 ~ 18682574 (+) False LOC110495731
XM_036952142.1 mRNA downstream 50288 18677126 ~ 18683346 (+) False LOC110495731
XM_021571123.2 mRNA downstream 50293 18677131 ~ 18683346 (+) False LOC110495731
TU1743460 other upstream 30993 18594334 ~ 18595600 (+) True LOC110495728
TU1743410 other upstream 246335 18379087 ~ 18380258 (+) True G1522684
TU1743080 other upstream 765979 17856141 ~ 17860614 (+) True G1522438
TU1743077 other upstream 782579 17839669 ~ 17844014 (+) False G1522437
TU1744253 other downstream 89024 18715862 ~ 18718645 (+) True LOC118936474
TU1744394 other downstream 332606 18959444 ~ 18974004 (+) True LOC110495746
TU1744431 other downstream 395167 19022005 ~ 19022395 (+) True G1523506
TU1744469 other downstream 499426 19126264 ~ 19130785 (+) True G1523526
TU1744438 other downstream 549025 19175863 ~ 19176962 (+) True LOC118941116

Expression Profile