RNA id: TU1744223


Basic Information

Item Value
RNA id TU1744223
length 245
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G1523349
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18648604 ~ 18648848 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctcagcccccagctgcgccctggacaccatatgtgaattaattgccccccatttatcttcagagtttgtactgttaggtgacctaaactgggatatgcttaataATACCCCGGCCAttctacaatctaaactagatgccctcaatctcacccaaattatcatggaacctaccaggtacaaccccaaatccgtaaactcgggcaccctcatagatatcatcctgaccaacctgtcctctaaatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1744221 lncRNA downstream 3496 18644900 ~ 18645108 (-) True G1523347
TU1744217 lncRNA downstream 14063 18633304 ~ 18634541 (-) True G1523343
TU1744216 lncRNA downstream 14867 18633304 ~ 18633737 (-) False G1523343
TU1744194 lncRNA downstream 21363 18626543 ~ 18627241 (-) True G1523328
TU1744215 lncRNA downstream 22213 18626122 ~ 18626391 (-) True G1523342
TU1744225 lncRNA upstream 1124 18649972 ~ 18650178 (-) True G1523351
TU1744226 lncRNA upstream 1822 18650670 ~ 18650890 (-) True G1523352
TU1744168 lncRNA upstream 20590 18669438 ~ 18672666 (-) True G1523311
TU1744240 lncRNA upstream 25048 18673896 ~ 18674383 (-) True G1523366
TU1745341 lncRNA upstream 53976 18702824 ~ 18722380 (-) True G1524294
XM_036952140.1 mRNA downstream 5117 18629091 ~ 18643487 (-) True LOC110497079
XM_036952139.1 mRNA downstream 31558 18604597 ~ 18617046 (-) True LOC110495729
XM_036952138.1 mRNA downstream 45434 18595784 ~ 18603170 (-) True LOC118941108
XM_036951415.1 mRNA downstream 134741 18499826 ~ 18513863 (-) True LOC110497072
NM_001124594.1 mRNA downstream 201301 18445083 ~ 18447303 (-) False ghs-r
XM_021571128.2 mRNA upstream 101921 18750769 ~ 18764433 (-) True LOC110495732
XM_021571137.2 mRNA upstream 214688 18863536 ~ 18874393 (-) False LOC110495738
XM_021571135.2 mRNA upstream 214688 18863536 ~ 18878944 (-) False LOC110495738
XM_021571136.2 mRNA upstream 214688 18863536 ~ 18878944 (-) True LOC110495738
XM_021571142.2 mRNA upstream 234117 18882965 ~ 18886219 (-) False LOC110495742
TU1744093 other downstream 81357 18561906 ~ 18567247 (-) True G1523241
TU1744079 other downstream 106893 18541145 ~ 18541711 (-) True G1523234
TU1744124 other downstream 202043 18445587 ~ 18446561 (-) True ghs-r
TU1743986 other downstream 212552 18432093 ~ 18436052 (-) False G1523149
TU1745358 other upstream 100277 18749125 ~ 18749395 (-) True G1524311
TU1745534 other upstream 495137 19143985 ~ 19164126 (-) True G1524473
TU1745684 other upstream 924780 19573628 ~ 19577100 (-) True LOC110495764
TU1745849 other upstream 1073897 19722745 ~ 19730068 (-) False G1524755
TU1745850 other upstream 1074586 19723434 ~ 19725531 (-) True G1524755

Expression Profile