RNA id: TU1744278


Basic Information

Item Value
RNA id TU1744278
length 917
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1523388
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18746230 ~ 18747146 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccattactccacctatacaacaacacaggactaggactatacatcctttaagtagcccattactccacctatacaacaacacaggactaggactatacatcctgtaagtagcccattactccacctatacaacaacacaggactaggactatacatcctgtaagtagcccattactccacctatacaacaacacaggactaggactatacatcctttaagtagcccattactccacctatacaacaacacaggactaggactatacatcctgtaagtagcccattactccacctatacaacaacacaggactaggactatacatcctgtaagtagcccattactccacctatacaacaacacaggactaggactatacatcctgtaagtagcccattactccacctatacaacaacacaggactaggactatacatcctgtaagtagcccattactccacctatacaacaacacaggactaggactatacatcctgtaagtagcccattactccacctatacaacaacacagggctaggactatacatcctgtaagtagcccattactccacctatacaacaacacaggactaggactatacatcctgtaagtagcccattactccacctatacaacaacacaggactaggactatacatcctgtaagtagcccattaatccacctatacaacaacacaggactaggactatacatcctgtaagtagcccattactccacctatacaacaacacaggactaggactatacatcctttaagtagcccattactccacctatacaacaacacaggactaggactatacatcctgtaagtagcccattactccacctatacaacaacacaggactaggactatacatcctgtaagtagcccattactccacctatacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1744249 lncRNA upstream 24139 18702289 ~ 18722091 (+) False LOC118936474
TU1744241 lncRNA upstream 69759 18676256 ~ 18676471 (+) True G1523367
TU1743528 lncRNA upstream 73516 18651347 ~ 18672714 (+) True LOC110495730
TU1743506 lncRNA upstream 119392 18626593 ~ 18626838 (+) True G1522765
TU1743505 lncRNA upstream 119800 18626154 ~ 18626430 (+) True G1522764
TU1744280 lncRNA downstream 2289 18749435 ~ 18749865 (+) True G1523390
TU1744281 lncRNA downstream 3633 18750779 ~ 18752093 (+) False G1523391
TU1744282 lncRNA downstream 3633 18750779 ~ 18752093 (+) True G1523391
TU1744283 lncRNA downstream 10228 18757374 ~ 18764499 (+) True G1523392
TU1744290 lncRNA downstream 18918 18766064 ~ 18864014 (+) False G1523398
LOC110497080 mRNA upstream 4470 18739823 ~ 18741760 (+) True LOC110497080
XM_036952146.1 mRNA upstream 24184 18715799 ~ 18722046 (+) False LOC118936474
XM_036952147.1 mRNA upstream 24184 18715799 ~ 18722046 (+) False LOC118936474
XM_036952148.1 mRNA upstream 24184 18715799 ~ 18722046 (+) False LOC118936474
XM_036952150.1 mRNA upstream 24506 18715799 ~ 18721724 (+) False LOC118936474
XM_036952151.1 mRNA downstream 29563 18776709 ~ 18784988 (+) False LOC110495733
XM_036952152.1 mRNA downstream 29569 18776715 ~ 18784988 (+) True LOC110495733
XM_021571131.2 mRNA downstream 45251 18792397 ~ 18799883 (+) False LOC110495734
XM_036952153.1 mRNA downstream 45251 18792397 ~ 18799883 (+) False LOC110495734
XM_021571132.2 mRNA downstream 59812 18806958 ~ 18842112 (+) False LOC110495735
TU1744253 other upstream 27585 18715862 ~ 18718645 (+) True LOC118936474
TU1743460 other upstream 150630 18594334 ~ 18595600 (+) True LOC110495728
TU1743410 other upstream 365972 18379087 ~ 18380258 (+) True G1522684
TU1743080 other upstream 885616 17856141 ~ 17860614 (+) True G1522438
TU1743077 other upstream 902216 17839669 ~ 17844014 (+) False G1522437
TU1744394 other downstream 212298 18959444 ~ 18974004 (+) True LOC110495746
TU1744431 other downstream 274859 19022005 ~ 19022395 (+) True G1523506
TU1744469 other downstream 379118 19126264 ~ 19130785 (+) True G1523526
TU1744438 other downstream 428717 19175863 ~ 19176962 (+) True LOC118941116
TU1744489 other downstream 453881 19201027 ~ 19202089 (+) False G1523542

Expression Profile