RNA id: TU1745415


Basic Information

Item Value
RNA id TU1745415
length 623
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1524367
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18882028 ~ 18882650 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcacatacagttgaagtcagaagtttacatacacttaggttggagtcattaaaacttgtttttcaaccactccacacatttcttgttaacaaactatagttttggcatgtcatttttccaataattgttcagagacagattatttcacttataattcactgtatctcaattccagtgggtcagaagtttacatacactaagttgactatgcctttaaacagcttggaaatttccagaaaatgatgtcatgataggctaattgacataatttgagtcaattagaggtgtacctgtggatgtatttcaaggcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaatcaaaagatttcagccaagacctccaccaAAAagttatagacctccacaagtctggttcatccttgggagcaatataCAAAGGCCTGAAGGtagcacgttcatctgtacaaacaatagtacacaagtataaacaccatgggaccacgtagctgccataccactcaggaaggagacacgttctgtttcctagagatgaacatactttggtgcgaaaagtgcaaatcaatcccagaacaacagcaaaggaccttgtgaagatactggagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1745414 lncRNA downstream 1216 18880612 ~ 18880812 (-) True G1524366
TU1745412 lncRNA downstream 3782 18877865 ~ 18878246 (-) True G1524364
TU1745411 lncRNA downstream 6524 18875284 ~ 18875504 (-) True G1524363
TU1745410 lncRNA downstream 7154 18874635 ~ 18874874 (-) True G1524362
TU1745409 lncRNA downstream 10292 18871443 ~ 18871736 (-) True G1524361
TU1745332 lncRNA upstream 345 18882995 ~ 18904709 (-) True LOC110495742
TU1745446 lncRNA upstream 63069 18945719 ~ 18948078 (-) True G1524393
TU1745449 lncRNA upstream 66467 18949117 ~ 18949348 (-) True G1524396
TU1745450 lncRNA upstream 66884 18949534 ~ 18949771 (-) True G1524397
TU1745451 lncRNA upstream 69375 18952025 ~ 18952268 (-) True G1524398
XM_021571135.2 mRNA downstream 3084 18863536 ~ 18878944 (-) False LOC110495738
XM_021571136.2 mRNA downstream 3084 18863536 ~ 18878944 (-) True LOC110495738
XM_021571137.2 mRNA downstream 7635 18863536 ~ 18874393 (-) False LOC110495738
XM_021571128.2 mRNA downstream 117595 18750769 ~ 18764433 (-) True LOC110495732
XM_036952140.1 mRNA downstream 238541 18629091 ~ 18643487 (-) True LOC110497079
XM_021571142.2 mRNA upstream 315 18882965 ~ 18886219 (-) False LOC110495742
XM_021571143.2 mRNA upstream 315 18882965 ~ 18886219 (-) False LOC110495742
XM_036952158.1 mRNA upstream 315 18882965 ~ 18886220 (-) False LOC110495742
XM_036952160.1 mRNA upstream 9071 18891721 ~ 18894683 (-) False LOC110495739
XM_021571139.2 mRNA upstream 9071 18891721 ~ 18895745 (-) False LOC110495739
TU1745358 other downstream 132633 18749125 ~ 18749395 (-) True G1524311
TU1744093 other downstream 314781 18561906 ~ 18567247 (-) True G1523241
TU1744079 other downstream 340317 18541145 ~ 18541711 (-) True G1523234
TU1744124 other downstream 435467 18445587 ~ 18446561 (-) True ghs-r
TU1743987 other downstream 445976 18432093 ~ 18436052 (-) True G1523149
TU1745534 other upstream 261335 19143985 ~ 19164126 (-) True G1524473
TU1745684 other upstream 690978 19573628 ~ 19577100 (-) True LOC110495764
TU1745849 other upstream 840095 19722745 ~ 19730068 (-) False G1524755
TU1745850 other upstream 840784 19723434 ~ 19725531 (-) True G1524755
TU1746271 other upstream 1688446 20571096 ~ 20571867 (-) True LOC110497093

Expression Profile