RNA id: TU1745498


Basic Information

Item Value
RNA id TU1745498
length 1566
lncRNA type read_through
GC content 0.42
exon number 2
gene id G1524443
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19068654 ~ 19124540 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gTGTGCCatgtttaaagttaatttgtggaatttctttccttaatgcgtttgaatcaatcaattgtgttgtgacaaggtaggggttgtttacagaagattgccctatttggaGAAAAttaacaagtccatattatggcaagaacaggtcaaataagcaaagagaaacaacagtccatcattaccttaagacatgaagatcagtcaatcaggaaagtttcaagaactttgaaagtttcttcaagtgcagtcgcaagaaCCATAAagcgatatgatgaaactggctctcatgaggaccaccacaggaaagaaagacccagagttacctctgctgcagaggataagttcattagagttaccagcctcataaattgcagaccaaataaatgcttcacaaagttcaagtaacagacacatctcaacatcaacttttcaaaggagactgcgtgaatcagaccttcatggtcaaaaTTCTGCAAAGagatcactactaaaggacaccaataataaaaagagacttgcttgggccaagaaacacaagcaatagacattagactggtggaaatctgtcctttggtcagatcagtccaaatttgagattttggttccaacctccgtgtctttgtgagacgcggagtaggtgaacggatgatctccgcatatgtaGTTCACAGCGTGAAtcatggaggatgaggtgtgatggtgtggggttgctttgttggtgacactgtctgtgatctatttagaattcaagcacacttaaccagcatggctaccacagcattctgcagcgatccgccatcccatctggtttgcgcttagtggaactaatcatttgttttcaacaggacaatgacccaacacacctccaggctgtgtaagggatatttgaacaagaaggagagtgatggagttctgcatcagatgatccagcttccacaatcacccgacctcatccCAAGTGAGATTGCttgggaaaagcagccaacaagtgctcagcatatgagcgaactccttcaagactgttgaaaaggcattccaggtgaagatggttgagagaatgccaagtgtgtgcaaagctgacatcaagtAAGTTTAgtaagttcaagacaactggtaaCTCGGGAAAAAGGAGCTACGACTTGGAAAATACGTTTTCATTTTTCATCCAGCTCGGAATTGTAAAtttggaactcgggcctctttaaatcaaatcaaatcaaatgtatttatatagaccttcgtacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtggctaggaaaaagagCTCTTTaaagagctacgacctgaagatcactgacataaTCATGATTCAAgctttttttgttgagttcccagttgtcttaaaaGTACCatgaatccagagaatgccagaccttgattacaaagtttgatgacaaaatttgcccacgaaggaccgctgcaccaccttcctgttcaagtgagcacagcacaacaagttgagtccaaaaatgtcttgtatgatTCATAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1745495 lncRNA downstream 16185 19051933 ~ 19052469 (-) True G1524441
TU1745494 lncRNA downstream 16829 19051065 ~ 19051825 (-) True G1524440
TU1745484 lncRNA downstream 40462 19027094 ~ 19028192 (-) True G1524431
TU1745482 lncRNA downstream 49816 19018362 ~ 19018838 (-) True G1524429
TU1745476 lncRNA downstream 74894 18993464 ~ 18993760 (-) True G1524423
TU1745542 lncRNA upstream 38701 19163241 ~ 19233214 (-) True G1524480
TU1745567 lncRNA upstream 81689 19206229 ~ 19206601 (-) True G1524502
TU1745569 lncRNA upstream 85975 19210515 ~ 19211580 (-) True G1524504
TU1745584 lncRNA upstream 111901 19236441 ~ 19236658 (-) True G1524516
TU1745572 lncRNA upstream 157254 19281794 ~ 19286226 (-) True G1524506
XM_036952162.1 mRNA downstream 152966 18909006 ~ 18915688 (-) True crlf1a
XM_036952161.1 mRNA downstream 152967 18909006 ~ 18915687 (-) False crlf1a
XM_036951416.1 mRNA downstream 160696 18905515 ~ 18907958 (-) True LOC110497081
XM_021571141.2 mRNA downstream 166300 18898437 ~ 18902354 (-) True LOC110495741
XM_036952159.1 mRNA downstream 172376 18891721 ~ 18896278 (-) True LOC110495739
XM_036952183.1 mRNA upstream 62867 19187407 ~ 19195604 (-) False acvr1l
XM_036952182.1 mRNA upstream 62867 19187407 ~ 19195633 (-) False acvr1l
XM_021571148.2 mRNA upstream 62867 19187407 ~ 19200058 (-) False acvr1l
XM_021571150.2 mRNA upstream 62867 19187407 ~ 19200059 (-) True acvr1l
XM_021571154.2 mRNA upstream 198116 19322656 ~ 19339854 (-) False LOC110495751
TU1745358 other downstream 319259 18749125 ~ 18749395 (-) True G1524311
TU1744093 other downstream 501407 18561906 ~ 18567247 (-) True G1523241
TU1744079 other downstream 526943 18541145 ~ 18541711 (-) True G1523234
TU1744124 other downstream 622093 18445587 ~ 18446561 (-) True ghs-r
TU1743987 other downstream 632602 18432093 ~ 18436052 (-) True G1523149
TU1745534 other upstream 19445 19143985 ~ 19164126 (-) True G1524473
TU1745684 other upstream 449088 19573628 ~ 19577100 (-) True LOC110495764
TU1745849 other upstream 598205 19722745 ~ 19730068 (-) False G1524755
TU1745850 other upstream 598894 19723434 ~ 19725531 (-) True G1524755
TU1746271 other upstream 1446556 20571096 ~ 20571867 (-) True LOC110497093

Expression Profile