RNA id: TU1744469


Basic Information

Item Value
RNA id TU1744469
length 553
RNA type TUCP
GC content 0.50
exon number 3
gene id G1523526
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19101756 ~ 19142175 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCACAGTGTCAACACTACTTGAAGAAATAGAGAACCAGTGGGTGGTCTCTGACAGACTTATTGTTAGCTAGGAGGAAGACATGGAGGATTCAACGCTGACACAGAGGAGGGCTGAGTGTCAGTTGAAGGATAGGGAGATCCAGACAGACTACATGATGGAGCTGGGAGCCAGGTTGGTTCTGGTGAGACAGatccagagggagcaggagaaggagatgaagaggaTTTGGTTTGAGACGAGGAAAATGCCAAGCCTGATTGAGGAGAATGTGAGAGATGTGACCAAACGTCCACTCACTGAGTTCATGGCTCCCTGTATTGACTCCCTCCCACCACTGGCTTTCACCAATCGGAGGCCAATACCAACCATGTTGCATCCCCCCTCTCCATTGGTCATACGCACTCAGGATGCACAGCGATTCATTGTATTTTCCTACTTTGTCCCTGCTGAGTGCCCAGTTTCCACAGAGGCCACAGCAGATGTATCTGCTGGTAGAAGAGAGGACTTGTCGACAGATACACATCTTTCCTCAATGCTGCATCGATACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1744452 lncRNA upstream 74228 19051566 ~ 19052036 (+) True G1523517
TU1744420 lncRNA upstream 134679 18991315 ~ 18991585 (+) True G1523498
TU1744410 lncRNA upstream 168893 18957019 ~ 18957371 (+) True G1523488
TU1744409 lncRNA upstream 170052 18955909 ~ 18956212 (+) True G1523487
TU1744359 lncRNA upstream 243843 18882031 ~ 18882421 (+) True G1523449
TU1744488 lncRNA downstream 70317 19201102 ~ 19202089 (+) False G1523542
TU1744490 lncRNA downstream 70317 19201102 ~ 19202188 (+) True G1523542
TU1744522 lncRNA downstream 104901 19235686 ~ 19235905 (+) True G1523570
TU1744523 lncRNA downstream 106269 19237054 ~ 19265291 (+) True G1523571
TU1744529 lncRNA downstream 120150 19250935 ~ 19255872 (+) True G1523575
XM_036951418.1 mRNA upstream 7502 19113019 ~ 19118762 (+) True LOC118941065
XR_005037403.1 mRNA upstream 20910 19101854 ~ 19105354 (+) True LOC118941113
XM_021572932.2 mRNA upstream 46649 19077110 ~ 19079615 (+) True LOC110496918
XM_036952173.1 mRNA upstream 61380 19055649 ~ 19064884 (+) False LOC118941112
XM_036952172.1 mRNA upstream 61380 19058061 ~ 19064884 (+) True LOC118941112
XM_036952175.1 mRNA downstream 8614 19139399 ~ 19148567 (+) False LOC118941114
XM_036952174.1 mRNA downstream 11070 19141855 ~ 19148567 (+) True LOC118941114
XM_036952177.1 mRNA downstream 23169 19153954 ~ 19163071 (+) False LOC118941115
XM_036952178.1 mRNA downstream 23921 19154706 ~ 19163071 (+) False LOC118941115
XM_036952176.1 mRNA downstream 25625 19156410 ~ 19163071 (+) True LOC118941115
TU1744431 other upstream 103869 19022005 ~ 19022395 (+) True G1523506
TU1744394 other upstream 152260 18959444 ~ 18974004 (+) True LOC110495746
TU1744253 other upstream 407619 18715862 ~ 18718645 (+) True LOC118936474
TU1743460 other upstream 530664 18594334 ~ 18595600 (+) True LOC110495728
TU1743410 other upstream 746006 18379087 ~ 18380258 (+) True G1522684
TU1744438 other downstream 45078 19175863 ~ 19176962 (+) True LOC118941116
TU1744489 other downstream 70242 19201027 ~ 19202089 (+) False G1523542
TU1744498 other downstream 75447 19206232 ~ 19207234 (+) False otomp
TU1744499 other downstream 75447 19206232 ~ 19207234 (+) True otomp
TU1744577 other downstream 246282 19377067 ~ 19378472 (+) True G1523614

Expression Profile