RNA id: TU1745534


Basic Information

Item Value
RNA id TU1745534
length 5328
RNA type TUCP
GC content 0.45
exon number 2
gene id G1524473
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19143985 ~ 19164126 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtaagtttatcgatcactagacaaaacattatggacacctagcatcaaagtagcttggtcacgaaaatgagaaaagcaataaaattaattgcttacctttgatcttcggatgttttcactcacgagactcccagttacacaataaatgttccttttgttccataaagattcaaaatacctcagtttgtttggcgcgttgtgttcagaaatccacaggctcgagcggtcacaacaacgcagacaaattccaaatagtatccgtaatgtccacagaaacatgtcaaacgttttttataatcaatcctcaggttgattTTAAagtatataatcgataatatatcaaccggcactgtctctttttcagtaggagagggagagtcaaTGGCTGCaccactctgttgcgcaagcaaaactcatgcgaacacccagctatccactacGCGATGTTATCTtgctcgctcatttttcaaaataaaagcctgaaactatgtctaaagactgttgacaccttgaggaagcgataggaaagggaatctggttgatatccctttaaatggagcgaaggcaggctatggaacatatagctttcaaaatagaggccTCTTCCTGGTtttattttcctcaggttttcgcttgcaatatcagttctgttatactcacagataatattttgacagttttggaaactttagagtgttttctatcctaatctgtcaattatataattataattataataaaataaaatatcataTTCCTTCTATCAAATTCCTCTGTATCATATTCCTCTCCACCCTCCAACTCCCCCCCTGTTCTTCCTCAACTCCTCATCATTAAACACTCCCCAGATGTGTGAAAAGTCAACATTTTGTGTTTATACAGTGTTGTACAGTATGGCTTAACAAAAATCAAACAgagtaaacattttttattttatttttaaatgcttAGTTCTTTCATTGCATGCAAAAATaccatatccctccctccctactctctaTTACCCAGTCTACTCATCCATCTTCAAGCTTTCATCCCTTCCCTGCTCTTCTATCACCGTCTCAGTTCCACCTCCAGCTGGCTCCCTCTTTTTCTTCTCCtccagtctcttcctctcctctctcctcatcttttctctcttcttctcctccttttcttgaatctttctctccatctccaagaATGCAGCttgagctttctctctctttttcagctCCTCAGAACACTTCTTCTCTTTCTTAATTCTGTCTTTCATCATGTCATTATGTATCTTCATCAGCCCCTCTAACCTCTTTTTCTCTGccttttccttctcttttctttccttctctctctttttctgttctaacttctccctcttcttctcagCCTTCATGACTttcttctgctctttctctctctccttcatctctttcttctccctctttttttgcTCCTCCTCCTTGTGTtttatctcctttctctctttctcttcatctttCAACTTCTTATTCAGTTTCTTATTTTTCTCTTTTTCCTCCATCTTCAAAAATGGGATTTTCTGCATTTGGTTCATGAGCAGAAAGCCCACTCTTCCCAGGATGGTTTCTGCTCTCTCTGTTGAAACCTTCCCAATAGAGCACTTGGAATGGGCACAATCCGCCTCACTCTTCAATCCCTCCCTCGGGCTCACCTCCTCAGTGAcgctcctctcttcactctcaaTTTCAATGCCTATCCAATGATCCTAACAGGAAGACATTGACTCTAGATGTAATATTGTTCCAATGTAGCACATTCAATACATAACTGAGTGATCAACATACAATGATGGCCTCATGGGGCACCCCATTAGATTTTACAATACCTATAGATGTTCCTGGGTCCATACTAAAAGTAATACAAATGCTAACCCTAGTGAGGGGTGATGTTTTATACTATGAGCAAAGagcagcagggttggggtcaattccatttcaattccgaTCAAAAGACTCTAagattccaattctcttcaaagcattgaattgaaatggaaatgACCACCATCCCTGTAAAGTAGTAAGGTGAAATTCGACACCTACCTTTACCTCTTCCAGGGTCCAGGGCCTGGGTTCCTCATCCTCTGTCCTGCATATGGATGCTCCAACTCTAACAGGCATCTTAGTGACTACGCAGATCAGAGGGTTGGGCAGCTCATCATTGCGGGTTGCCAGAGTTAAGTTAGCATCTGAGACCAGCTGTTGAGCGTGAGGGCAGATATCCACCTCCACAGTAGTGCCCCTTCCTTTCTGATCTGGCTGCTTGGGGTCCTTGTCATGGATGCATGCCAGGCTTGGAGGATGTGCATGGACAGGGCTTTTATCACCCATCATTTCCTCTCTCTTGACAGTGGATGCAACTGCACTTTCCTCTATGTCAACTGAGCACTCTGTGGTGTTCTCAACGGTCTCCTCTGGCTGTTTGTGGTCAATGTTGTGGGTGCAGGGCAGCCTTAGAGACAGTGCTGTGGGTGCAGGAGGACTTTTTTCAGCCAAAAACTCCTCTTGGAGGACAGTGGACACGGAAGCGACTGCTTCACGGGCAACTGGACACTTGCTGGTGCCCTCTACTGCCTCCTCTGGTAGTTTGTAGTCATTGTCAAAGACAAGTTGCAGGCTTGAAGGCAGCACTAAGGGAAGACCTGTGGCTGCTGATGGATCCTCTCTATTAGCAACTGATGCCTCTGCGGCGACTGAGCACTCAGTGGCTTCCTCTATCGTCTCCTCTGgctgcttatggtcattgtccaaAACGTGTGACAAGCTTGGAGGCAGCCTTGGAGCAGGGCTTTTATCCAGGTCCTCTCCCTGGACAATGGATGTGCCTACAGCGATCTCTGTGGCAAGGGAGGACTCGGGTACATCCTCTTTTTCCTCCTTGGTCAGTTTGTGGTCAGAGTCACAGATGCATGGCGAGCTTGGAGGCAGTGCTGCAGGGTCAGGAGGGCTTTGATCAGCTCCCATGTCCTCTTTGAGGTGAGTGGACACATCATTGGTTGTTTCACTGGCAACTGGACACTTGTTGGTTCCCTCTACTGCCGCCCCTGGCAGTTTGTCGTCAAAGACACGTGGCAGACTTGGAGGCAGCATTGGGACAGGGCATTTAGCTGCTGATCTGTCCACTCCATCAACAGTAGCTGTGCCTGAAGTGGCCTCTGTAGCAAATGAGACCACATAGGATTCCTCTACTGTGTGCTCTGGAGGCATGAAGTCATCGTCAACGACTGGTGGCAGGCATGGAGGCAGCACTGAAGGAAGAATTGTAGCTGCCCATCGGTTCTCTCTCTTGACAGTGGCTGTATCTGCAGTGTCCACTGTGGCAACTCGGCACTCCGTGGCTGAAACAGCAGGCTGGGAGGTTTCCGGGACTTTGAATGAATTGCCAATGAACCGCTGAGCCAGtggtgggagggagaaaggatagAATCTGTCCTCTTCCTTGATATTAGATATTGCCACTGGAGAATCTGAGTCCTCAGTGGTTCCCTCTACTGTCTGCTGTGGTGGAATGGAGTCATCGTTAAAGAAGTGTGGCAGGTATCGATGCAGCATTGAGGAAAGATGTGTATCTGTCGACAAGTCCTCTCTTCTACCAGCAGATACATCTGCTGTGGCCTCTGTGGAAACTGGGCACTCAGCAGGGACAAAGTAGGAAAATACAATGAATCGCTGTGCATCCTGAGTGCGTATGACCAATGGAGAGGGGGGATGCAACATGGTTGGTATTGGCCTCCGATTGGTGAAAGCCAGTGGTGGGAGGGAGTCAATACAGGGAGCCATGAACTCAGTGAGTGGACGTTTGGTCACATCTCTCACATTCTGCAGGAGAAAAGAAACAGACATGATGAAAGTGATCCCATTCAGTACATACATTCTTTATGAGTGAACTCTATTTACTTTTacatcacatatacagtgccttcagaaagcattcagaccctttcacttcttccacattttgttacctcagccttattctaaaattgattaaataatttttttcagtcatcaatctacacaaaataccccatattgacTAAGCAAGAACAGAATCGTtccaaattaatttaaaataaaaataatgggaaTATGCTTtcgtattcagtactttgttgaagcaccgttggcagcgattacagcatagaatcttcttgggtattacgctacaCACTCGGCATACTTGTGtttggggactttctcccattcttctctgcagatcctctcaagctctgttaggttggatggggagagttgcggcacagctattttcaggtctgtccatAGATGTTCGAtccggttcaagtccgggctctggctgggccactcaaggacattcagagacgtgtcccaaagtcactcctgcgttgtcttggcttgtgcttagggtcgttgttctgttgtaaGGTGACCcatcgcccccagtctgaggtcctgagcgctctggagcaggttttcttcaaggatctctctgtgctccgttcatctttgcctcgatcctgactagtctcttagtccacgccgctgaaaaacatccccacagcatgatgctgccaccaccgtgcttgacTGTGCCGtaggtgccagatttcctccagacgtgacgcttggcaatcaggccaaagatttcaatcttggtttcatcagaccagagcatcttgtttctcatggtctgagagtcaatgggtgccttttgggaaactccaagtgggctgtcatgtgccttttactgaggagtggcttccatctggcaaatctaccgtaaaggcctgattggtgaagtgctgcagagatggttgtccttctggaaggttctcctatctccacagaggaactcttgtgCTCTGTCAGtcactatcgggttcttggtcacctccccgactaAGACCCTTCTCCTCCGAATGCTCAGCTTGccgggcgtccagctctaggaagagtcttggtggttccaaacttcttctatttaagaatgatggaggtcactgtgttcttggggaccttcaatgctgcggacATCTgtttctcgacacaatcctgtctcggagctctacggacaatcccTTCTACCTCATGGTTTGGTATTTGATCTGGCATGCACTgtccactgtgggaccttatatagacaggtgtgtgcctttccaaatcatgtcatatCAATTTCATTTACAAcaagtccaatcaagttgtagaaacatcgaaaggacgatcaatggaaacaggatgcacctgagctcaatttcgagactcatagcaaagggtctgtatacttatgtaaataaagtatttctgtttttaaatgtaatacatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1745514 lncRNA downstream 3884 19098452 ~ 19140101 (-) True G1524454
TU1745498 lncRNA downstream 19445 19068654 ~ 19124540 (-) True G1524443
TU1745495 lncRNA downstream 91516 19051933 ~ 19052469 (-) True G1524441
TU1745494 lncRNA downstream 92160 19051065 ~ 19051825 (-) True G1524440
TU1745484 lncRNA downstream 115793 19027094 ~ 19028192 (-) True G1524431
TU1745567 lncRNA upstream 42103 19206229 ~ 19206601 (-) True G1524502
TU1745569 lncRNA upstream 46389 19210515 ~ 19211580 (-) True G1524504
TU1745584 lncRNA upstream 72315 19236441 ~ 19236658 (-) True G1524516
TU1745572 lncRNA upstream 117668 19281794 ~ 19286226 (-) True G1524506
TU1745606 lncRNA upstream 128219 19292345 ~ 19292724 (-) True G1524537
XM_036952162.1 mRNA downstream 228297 18909006 ~ 18915688 (-) True crlf1a
XM_036952161.1 mRNA downstream 228298 18909006 ~ 18915687 (-) False crlf1a
XM_036951416.1 mRNA downstream 236027 18905515 ~ 18907958 (-) True LOC110497081
XM_021571141.2 mRNA downstream 241631 18898437 ~ 18902354 (-) True LOC110495741
XM_036952159.1 mRNA downstream 247707 18891721 ~ 18896278 (-) True LOC110495739
XM_036952183.1 mRNA upstream 23281 19187407 ~ 19195604 (-) False acvr1l
XM_036952182.1 mRNA upstream 23281 19187407 ~ 19195633 (-) False acvr1l
XM_021571148.2 mRNA upstream 23281 19187407 ~ 19200058 (-) False acvr1l
XM_021571150.2 mRNA upstream 23281 19187407 ~ 19200059 (-) True acvr1l
XM_021571154.2 mRNA upstream 158530 19322656 ~ 19339854 (-) False LOC110495751
TU1745358 other downstream 394590 18749125 ~ 18749395 (-) True G1524311
TU1744093 other downstream 576738 18561906 ~ 18567247 (-) True G1523241
TU1744079 other downstream 602274 18541145 ~ 18541711 (-) True G1523234
TU1744124 other downstream 697424 18445587 ~ 18446561 (-) True ghs-r
TU1743986 other downstream 707933 18432093 ~ 18436052 (-) False G1523149
TU1745684 other upstream 409502 19573628 ~ 19577100 (-) True LOC110495764
TU1745849 other upstream 558619 19722745 ~ 19730068 (-) False G1524755
TU1745850 other upstream 559308 19723434 ~ 19725531 (-) True G1524755
TU1746271 other upstream 1406970 20571096 ~ 20571867 (-) True LOC110497093
TU1748552 other upstream 3097930 22262056 ~ 22262462 (-) True G1527230

Expression Profile