RNA id: TU1745542


Basic Information

Item Value
RNA id TU1745542
length 364
lncRNA type read_through
GC content 0.37
exon number 2
gene id G1524480
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19163241 ~ 19233214 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATAAGAGAAATATgaaagggaatctggttgatatccctttaaatggagcgaaggcaggctatggaacatatagctttcaaaatagaggccTCTTCCTGGTtttattttcctcaggttttcgcttgcaatatcagttctgttatactcacagacaatattttgacagttttggaaactttagagtgttttctatcctaatctgtcaattatatgcatattctagcatatgggcctgagaaataggccgtttactttgggaacgttctttttccaaacataaaaatagtgccccctagctgaaagaggttaaagtgttgtgttgtctcacttgtcgtgatgtgtgttttgtcctatgttttaagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1745514 lncRNA downstream 23140 19098452 ~ 19140101 (-) True G1524454
TU1745498 lncRNA downstream 38701 19068654 ~ 19124540 (-) True G1524443
TU1745495 lncRNA downstream 110772 19051933 ~ 19052469 (-) True G1524441
TU1745494 lncRNA downstream 111416 19051065 ~ 19051825 (-) True G1524440
TU1745484 lncRNA downstream 135049 19027094 ~ 19028192 (-) True G1524431
TU1745584 lncRNA upstream 3227 19236441 ~ 19236658 (-) True G1524516
TU1745572 lncRNA upstream 48580 19281794 ~ 19286226 (-) True G1524506
TU1745606 lncRNA upstream 59131 19292345 ~ 19292724 (-) True G1524537
TU1745610 lncRNA upstream 62399 19295613 ~ 19298463 (-) True G1524541
TU1745614 lncRNA upstream 81898 19315112 ~ 19316506 (-) True G1524545
XM_036952162.1 mRNA downstream 247553 18909006 ~ 18915688 (-) True crlf1a
XM_036952161.1 mRNA downstream 247554 18909006 ~ 18915687 (-) False crlf1a
XM_036951416.1 mRNA downstream 255283 18905515 ~ 18907958 (-) True LOC110497081
XM_021571141.2 mRNA downstream 260887 18898437 ~ 18902354 (-) True LOC110495741
XM_036952159.1 mRNA downstream 266963 18891721 ~ 18896278 (-) True LOC110495739
XM_021571154.2 mRNA upstream 89442 19322656 ~ 19339854 (-) False LOC110495751
XM_036952186.1 mRNA upstream 89442 19322656 ~ 19339854 (-) False LOC110495751
XM_036952187.1 mRNA upstream 89442 19322656 ~ 19339854 (-) False LOC110495751
XM_021571155.2 mRNA upstream 89442 19322656 ~ 19384501 (-) False LOC110495751
XR_002469467.2 mRNA upstream 103735 19336949 ~ 19339867 (-) False LOC110495751
TU1745358 other downstream 413846 18749125 ~ 18749395 (-) True G1524311
TU1744093 other downstream 595994 18561906 ~ 18567247 (-) True G1523241
TU1744079 other downstream 621530 18541145 ~ 18541711 (-) True G1523234
TU1744124 other downstream 716680 18445587 ~ 18446561 (-) True ghs-r
TU1743987 other downstream 727189 18432093 ~ 18436052 (-) True G1523149
TU1745684 other upstream 340414 19573628 ~ 19577100 (-) True LOC110495764
TU1745849 other upstream 489531 19722745 ~ 19730068 (-) False G1524755
TU1745850 other upstream 490220 19723434 ~ 19725531 (-) True G1524755
TU1746271 other upstream 1337882 20571096 ~ 20571867 (-) True LOC110497093
TU1748552 other upstream 3028842 22262056 ~ 22262462 (-) True G1527230

Expression Profile