RNA id: TU1745567


Basic Information

Item Value
RNA id TU1745567
length 341
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G1524502
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19206229 ~ 19206601 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAGGTTTTCTGAGTGGAGAACGAGATgaatgagaagaggagaagagtcaTGGCCAGCCTTCTATCCAGACGATCCATGTTGACTGACAAAATCGGAGAAatcttctctctctcaaacacacactgtgAAGACGAAATCtcctctcaaacacacactgtgAAGACGaaatctcctctctctcaaacacacactgtgAAGACGaaatctcctctctctcaaacacacactgtgAAGACGaaatctcctctctctcaaacacacactgtgAAGACAAAATCTCCCCTCTCACACGAGACACACTCCAACTGAATGCTACAGTGGAGAAACCAGTAACCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1745514 lncRNA downstream 66128 19098452 ~ 19140101 (-) True G1524454
TU1745498 lncRNA downstream 81689 19068654 ~ 19124540 (-) True G1524443
TU1745495 lncRNA downstream 153760 19051933 ~ 19052469 (-) True G1524441
TU1745494 lncRNA downstream 154404 19051065 ~ 19051825 (-) True G1524440
TU1745484 lncRNA downstream 178037 19027094 ~ 19028192 (-) True G1524431
TU1745569 lncRNA upstream 3914 19210515 ~ 19211580 (-) True G1524504
TU1745584 lncRNA upstream 29840 19236441 ~ 19236658 (-) True G1524516
TU1745572 lncRNA upstream 75193 19281794 ~ 19286226 (-) True G1524506
TU1745606 lncRNA upstream 85744 19292345 ~ 19292724 (-) True G1524537
TU1745610 lncRNA upstream 89012 19295613 ~ 19298463 (-) True G1524541
XM_021571150.2 mRNA downstream 6170 19187407 ~ 19200059 (-) True acvr1l
XM_021571148.2 mRNA downstream 6171 19187407 ~ 19200058 (-) False acvr1l
XM_036952182.1 mRNA downstream 10596 19187407 ~ 19195633 (-) False acvr1l
XM_036952183.1 mRNA downstream 10625 19187407 ~ 19195604 (-) False acvr1l
XM_036952162.1 mRNA downstream 290541 18909006 ~ 18915688 (-) True crlf1a
XM_021571154.2 mRNA upstream 116055 19322656 ~ 19339854 (-) False LOC110495751
XM_036952186.1 mRNA upstream 116055 19322656 ~ 19339854 (-) False LOC110495751
XM_036952187.1 mRNA upstream 116055 19322656 ~ 19339854 (-) False LOC110495751
XM_021571155.2 mRNA upstream 116055 19322656 ~ 19384501 (-) False LOC110495751
XR_002469467.2 mRNA upstream 130348 19336949 ~ 19339867 (-) False LOC110495751
TU1745534 other downstream 42103 19143985 ~ 19164126 (-) True G1524473
TU1745358 other downstream 456834 18749125 ~ 18749395 (-) True G1524311
TU1744093 other downstream 638982 18561906 ~ 18567247 (-) True G1523241
TU1744079 other downstream 664518 18541145 ~ 18541711 (-) True G1523234
TU1744124 other downstream 759668 18445587 ~ 18446561 (-) True ghs-r
TU1745684 other upstream 367027 19573628 ~ 19577100 (-) True LOC110495764
TU1745849 other upstream 516144 19722745 ~ 19730068 (-) False G1524755
TU1745850 other upstream 516833 19723434 ~ 19725531 (-) True G1524755
TU1746271 other upstream 1364495 20571096 ~ 20571867 (-) True LOC110497093
TU1748552 other upstream 3055455 22262056 ~ 22262462 (-) True G1527230

Expression Profile