RNA id: TU1745569


Basic Information

Item Value
RNA id TU1745569
length 1010
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G1524504
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19210515 ~ 19211580 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGTCATCATTTCTTTAATATATTTAAAGAGGTTGCAGAACTACAAATACCAGCAGGTGAAGAGTATTTACACACAGGTCTCTTTAGAACAATTTAAATCCTGAAGACAGACAGAAAATACTGTAGTGTCACAGCACCAATATACCTCCGTAGAGTGAGTTACTCTACAGGTACAACATTAACAAAATATAGAGGTCATAAGGAATTGTTTTGATAGAGAGAACATTCTCCAGAAGAAATGATAGAAAAAAATGGTGATTCCTGTTCATTCAATGGTGGCAGTGATTTACAGTACAAACATAATTTCAGTGGCTTCAAACATCTTATCACACGTATTATCACCAATATTTCAGCACCTTCAAGGTCAATCAAAACGCTCTGAATACATGGTTTAATGCAGTGTGAGTCGGCATTTGTTTTGAATTGCTGTGTATAGAGTGTCATGGATTACTGCTCTGGGTAGAAGTTCCTATTttagcacagatctaggatcagcttaccttcCCAAAATGGAACATTAACCACCAAAACATTAacctgaccttagatcagtgtctggTGGCGATTTATAGCTGTAATCCCCTCTCTGTCAGGTGTAGAGTGACTAGCATGGTGGTCTGCTATACCAACCGTGGGAACGCAGTGAACcatgggtgcacacacacacacacacacacacattgtGATTCAGTGAGTTAATGACATTGATATTTTTTATAGGAGGATAAGGGACTACTGGAACTGTGTGGGAGCAAAGAAACACTCTGAATATCTACCATATCATCacacgggagggagggagggagggagggagggagggagggagggagggagggagggagggagggaggatatagggagggaggggaggatggaggaaggaagggaggtgGGTATGGCGGGAGGGAGGATACGATATGGAGGTAGGgaaagaaagaggtggagagatagtgagggtagagatggagaggatgcTGGTTGATTTCTTTCTAGAAGGATCAGCACAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1745567 lncRNA downstream 3914 19206229 ~ 19206601 (-) True G1524502
TU1745514 lncRNA downstream 70414 19098452 ~ 19140101 (-) True G1524454
TU1745498 lncRNA downstream 85975 19068654 ~ 19124540 (-) True G1524443
TU1745495 lncRNA downstream 158046 19051933 ~ 19052469 (-) True G1524441
TU1745494 lncRNA downstream 158690 19051065 ~ 19051825 (-) True G1524440
TU1745584 lncRNA upstream 24861 19236441 ~ 19236658 (-) True G1524516
TU1745572 lncRNA upstream 70214 19281794 ~ 19286226 (-) True G1524506
TU1745606 lncRNA upstream 80765 19292345 ~ 19292724 (-) True G1524537
TU1745610 lncRNA upstream 84033 19295613 ~ 19298463 (-) True G1524541
TU1745614 lncRNA upstream 103532 19315112 ~ 19316506 (-) True G1524545
XM_021571150.2 mRNA downstream 10456 19187407 ~ 19200059 (-) True acvr1l
XM_021571148.2 mRNA downstream 10457 19187407 ~ 19200058 (-) False acvr1l
XM_036952182.1 mRNA downstream 14882 19187407 ~ 19195633 (-) False acvr1l
XM_036952183.1 mRNA downstream 14911 19187407 ~ 19195604 (-) False acvr1l
XM_036952162.1 mRNA downstream 294827 18909006 ~ 18915688 (-) True crlf1a
XM_021571154.2 mRNA upstream 111076 19322656 ~ 19339854 (-) False LOC110495751
XM_036952186.1 mRNA upstream 111076 19322656 ~ 19339854 (-) False LOC110495751
XM_036952187.1 mRNA upstream 111076 19322656 ~ 19339854 (-) False LOC110495751
XM_021571155.2 mRNA upstream 111076 19322656 ~ 19384501 (-) False LOC110495751
XR_002469467.2 mRNA upstream 125369 19336949 ~ 19339867 (-) False LOC110495751
TU1745534 other downstream 46389 19143985 ~ 19164126 (-) True G1524473
TU1745358 other downstream 461120 18749125 ~ 18749395 (-) True G1524311
TU1744093 other downstream 643268 18561906 ~ 18567247 (-) True G1523241
TU1744079 other downstream 668804 18541145 ~ 18541711 (-) True G1523234
TU1744124 other downstream 763954 18445587 ~ 18446561 (-) True ghs-r
TU1745684 other upstream 362048 19573628 ~ 19577100 (-) True LOC110495764
TU1745849 other upstream 511165 19722745 ~ 19730068 (-) False G1524755
TU1745850 other upstream 511854 19723434 ~ 19725531 (-) True G1524755
TU1746271 other upstream 1359516 20571096 ~ 20571867 (-) True LOC110497093
TU1748552 other upstream 3050476 22262056 ~ 22262462 (-) True G1527230

Expression Profile