RNA id: TU1745606


Basic Information

Item Value
RNA id TU1745606
length 380
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G1524537
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19292345 ~ 19292724 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttaatttcttcgaaaatacgtttttttttgttgtattatttgttctgtcttttcaggtggattaaactgaaattgcaaccaactttctaaggcttgtttaaaaaataacgatattttggagattatttccttttcaaacaaccaaaagtgagcaggtgtagtctgaataaagggaaaaaggccattcttgaacataggatgagacattcctaccaatttactagagaaccagtttggatttaaataTAACTTTTGTAtaactgatgcctttagtgagaggtctaatgctttaatatttaataatttctgccctccggattcatattcgttatataaataggcccttttaattttgtctggcttgcattccaaataaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1745572 lncRNA downstream 6119 19281794 ~ 19286226 (-) True G1524506
TU1745584 lncRNA downstream 55687 19236441 ~ 19236658 (-) True G1524516
TU1745542 lncRNA downstream 59131 19163241 ~ 19233214 (-) True G1524480
TU1745569 lncRNA downstream 80765 19210515 ~ 19211580 (-) True G1524504
TU1745567 lncRNA downstream 85744 19206229 ~ 19206601 (-) True G1524502
TU1745610 lncRNA upstream 2889 19295613 ~ 19298463 (-) True G1524541
TU1745614 lncRNA upstream 22388 19315112 ~ 19316506 (-) True G1524545
TU1745618 lncRNA upstream 29109 19321833 ~ 19322036 (-) True G1524548
TU1745620 lncRNA upstream 30071 19322795 ~ 19323638 (-) False LOC110495751
TU1745619 lncRNA upstream 84043 19376767 ~ 19378106 (-) True LOC110495751
XM_021571150.2 mRNA downstream 92286 19187407 ~ 19200059 (-) True acvr1l
XM_021571148.2 mRNA downstream 92287 19187407 ~ 19200058 (-) False acvr1l
XM_036952182.1 mRNA downstream 96712 19187407 ~ 19195633 (-) False acvr1l
XM_036952183.1 mRNA downstream 96741 19187407 ~ 19195604 (-) False acvr1l
XM_036952162.1 mRNA downstream 376657 18909006 ~ 18915688 (-) True crlf1a
XM_021571154.2 mRNA upstream 29932 19322656 ~ 19339854 (-) False LOC110495751
XM_036952186.1 mRNA upstream 29932 19322656 ~ 19339854 (-) False LOC110495751
XM_036952187.1 mRNA upstream 29932 19322656 ~ 19339854 (-) False LOC110495751
XM_021571155.2 mRNA upstream 29932 19322656 ~ 19384501 (-) False LOC110495751
XR_002469467.2 mRNA upstream 44225 19336949 ~ 19339867 (-) False LOC110495751
TU1745534 other downstream 128219 19143985 ~ 19164126 (-) True G1524473
TU1745358 other downstream 542950 18749125 ~ 18749395 (-) True G1524311
TU1744093 other downstream 725098 18561906 ~ 18567247 (-) True G1523241
TU1744079 other downstream 750634 18541145 ~ 18541711 (-) True G1523234
TU1744124 other downstream 845784 18445587 ~ 18446561 (-) True ghs-r
TU1745684 other upstream 280904 19573628 ~ 19577100 (-) True LOC110495764
TU1745849 other upstream 430021 19722745 ~ 19730068 (-) False G1524755
TU1745850 other upstream 430710 19723434 ~ 19725531 (-) True G1524755
TU1746271 other upstream 1278372 20571096 ~ 20571867 (-) True LOC110497093
TU1748552 other upstream 2969332 22262056 ~ 22262462 (-) True G1527230

Expression Profile