RNA id: TU1744577


Basic Information

Item Value
RNA id TU1744577
length 1383
RNA type TUCP
GC content 0.45
exon number 2
gene id G1523614
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19377067 ~ 19378472 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtgatatggctgacttgctttaacaaatgtggtttctactgacaattgcgATGTagaaactatggcataaggggaagacaagcggataagaggcaatccgtcatTTCGATTAAGAcgttaatgagcgagctaagacgGACGTTGTTAATGTAACTATTTGTTAAGcaattcagaacatgggccgttcttacagtgttctgcCTGTAcatcaagtcagaaccgtaggataaataaagggggtatataagcagacaatgaaagctcttacaatattcaatgattacatttcgcAAAAATAGGTTATAGGTTACATGTGCATCACCAAATCAGAACACTAGGCGAAATTAAGATGTGAAAACAGACCAAATTATTAGgctgaggcacatgggctactaacagcttacctcaaaacatacacttagtattactttattagctacagtatacatatcgcCCTGGcctattacatcatttatgcagcagagggctcccgaatggcgcagcagtctaaggcactgcatctcagggcaagaggcatcattacagaccctggttcgattccaggctgtatcacaaccggccgtgattgggaatcccatagggcggaaTAGCCTTCAGGCCACCTTGAAGCAGGACTCGCTGGTCACCATCAATTTTGAGGGAGATGTGATCATTGTGTTTGTTTTGATTAATCTTGTTGtatttgttgtattgtgttgatgttgttattttgctttaTGTTGTACTGAATTGTGTGTTCATGTTCACAGGGCTCCCTTGagaatgagaccctggtctcaatggtgACCCCCCTGTCTCATtggaatggtcccacctgatctcaccTGACTCAATCATTGAATCAACAGTCAACTCAGTtttcttgtcaatataatagatcatCTTTGATATGGattgcctggctacccaaatGCCTCAATAATGTATATCTGCAGACTACGGTTATTACATGCCGCACCCACAACAAATAATTTACTACAAACCGCACCCATTGCCATTGCGACTGCTAGCAGTGTCTCTGGCccacactccagcacagtaggtggcagGAATGCACCaacgagagcatggttgcatcaccacctggtatggcaactgctcggcctccgacggCAAGGTgctctagagggtagtgcgtacggcccagtaaatctctggggccaagcttcctgccatccaggacctctataccaggtggtgtcagagaaaGCCCTAGAAATTGcccaagactccagccaccctagtcatagactgttctctctggtgtGATGTCTGCGGGGCACAATTCAGACAAGCCAATCATGTCAAAACCCACATGCAAGTGCACACAGGAGTCAGGACATAGggaaaggggaatacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1744588 lncRNA upstream 15536 19359388 ~ 19361531 (+) True G1523624
TU1744556 lncRNA upstream 49791 19324064 ~ 19327276 (+) True G1523601
TU1744549 lncRNA upstream 85555 19291222 ~ 19291512 (+) True G1523594
TU1744547 lncRNA upstream 87749 19289066 ~ 19289318 (+) True G1523592
TU1744546 lncRNA upstream 88365 19288480 ~ 19288702 (+) True G1523591
TU1744602 lncRNA downstream 5756 19384228 ~ 19424159 (+) True G1523637
TU1744702 lncRNA downstream 151780 19530252 ~ 19530651 (+) True G1523726
TU1744705 lncRNA downstream 153443 19531915 ~ 19533004 (+) True G1523728
TU1744713 lncRNA downstream 168125 19546597 ~ 19547960 (+) True G1523734
TU1744714 lncRNA downstream 169924 19548396 ~ 19548778 (+) True G1523735
XM_036952184.1 mRNA upstream 55896 19295519 ~ 19321171 (+) False LOC110495750
XM_036952185.1 mRNA upstream 55896 19295519 ~ 19321171 (+) True LOC110495750
XM_021571152.2 mRNA upstream 90804 19263166 ~ 19286263 (+) True LOC110495749
XM_021570527.2 mRNA upstream 165493 19206164 ~ 19211574 (+) False otomp
NM_001124192.1 mRNA upstream 166399 19206242 ~ 19210668 (+) False otomp
XM_021571161.2 mRNA downstream 29172 19407644 ~ 19414042 (+) False LOC110495753
XM_021571162.2 mRNA downstream 29172 19407644 ~ 19414042 (+) True LOC110495753
XM_021571163.2 mRNA downstream 45777 19424249 ~ 19434856 (+) True LOC110495754
XM_021571165.2 mRNA downstream 58227 19436699 ~ 19444433 (+) False LOC110495755
XM_021571164.2 mRNA downstream 58229 19436701 ~ 19444433 (+) False LOC110495755
TU1744498 other upstream 169833 19206232 ~ 19207234 (+) False otomp
TU1744499 other upstream 169833 19206232 ~ 19207234 (+) True otomp
TU1744489 other upstream 174978 19201027 ~ 19202089 (+) False G1523542
TU1744438 other upstream 200105 19175863 ~ 19176962 (+) True LOC118941116
TU1744469 other upstream 246282 19126264 ~ 19130785 (+) True G1523526
TU1744614 other downstream 63573 19442045 ~ 19444309 (+) True LOC110495755
TU1744679 other downstream 127920 19506392 ~ 19507256 (+) True G1523703
TU1744791 other downstream 372260 19750732 ~ 19754018 (+) False LOC110495769
TU1744790 other downstream 379843 19758315 ~ 19761020 (+) True LOC110495769
TU1744845 other downstream 396620 19775092 ~ 19827966 (+) True G1523847

Expression Profile