RNA id: TU1745039



Basic Information


Item Value
RNA id TU1745039
length 320
lncRNA type antisense_over
GC content 0.54
exon number 2
gene id G1524032
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20123848 ~ 20124587 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTAGGGCCCTGTTGCCATTGTGTGCCTGAGAGTGGCAGCAGCACCACTCCTTTTCCTGCCTTCCAGAGGCTAGGGCTGCTTTGCTGGAGACCTCAGGGAGGTAGGAATAGAGCACTCCAGGCTTTCCGCTACTCTGCCAGATAAAAGTCAACAAAGGACTgggggacaggagcaggaacagagtgcTTCATAACGCCCCAGAACAAAAGTGGAAGTACCGTACATATTCCAGTTTATGCTTCAGTGTCTCCCGACCTCAGCATCCACAGCACTTAGAGGGTCGTCCAGCAGGTAGATATCAGCATCCTGGTACACAGCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1745000 lncRNA upstream 5635 20052769 ~ 20118213 (+) True G1523997
TU1744996 lncRNA upstream 18997 20049902 ~ 20104851 (+) True G1523994
TU1744964 lncRNA upstream 137695 19985722 ~ 19986153 (+) True G1523962
TU1744961 lncRNA upstream 140367 19983225 ~ 19983481 (+) True G1523959
TU1744924 lncRNA upstream 206083 19908900 ~ 19917765 (+) True LOC110495772
TU1745041 lncRNA downstream 481 20125068 ~ 20126928 (+) True G1524034
TU1745071 lncRNA downstream 67748 20192335 ~ 20192563 (+) True G1524059
TU1745101 lncRNA downstream 86678 20211265 ~ 20212004 (+) True G1524069
TU1745088 lncRNA downstream 110890 20235477 ~ 20236743 (+) True LOC110495784
TU1745124 lncRNA downstream 125691 20250278 ~ 20250488 (+) True G1524092
XM_036952233.1 mRNA upstream 13230 20065965 ~ 20110618 (+) False LOC110495776
XM_036952230.1 mRNA upstream 74794 19992564 ~ 20049054 (+) False LOC110495777
XM_021571205.2 mRNA downstream 38198 20162785 ~ 20164464 (+) True LOC110495779
XM_036951385.1 mRNA downstream 42646 20167233 ~ 20170345 (+) True si:busm1-52i16.2
XM_021571212.2 mRNA downstream 81897 20206484 ~ 20236753 (+) False LOC110495784
LOC110497092 mRNA downstream 119767 20244354 ~ 20245888 (+) True LOC110497092
XM_021571217.2 mRNA downstream 171430 20296017 ~ 20302100 (+) True LOC110495788
TU1744971 other upstream 47536 20066254 ~ 20076312 (+) True LOC110495776
TU1744968 other upstream 90203 20015948 ~ 20033645 (+) True LOC110495777
TU1744973 other upstream 113759 19992840 ~ 20010089 (+) False LOC110495777
TU1744915 other upstream 223829 19897060 ~ 19900019 (+) True LOC110495771
TU1744845 other upstream 295882 19775092 ~ 19827966 (+) True G1523847
TU1745087 other downstream 81905 20206492 ~ 20235180 (+) False LOC110495784
TU1745162 other downstream 181118 20305705 ~ 20306904 (+) True G1524124
TU1745224 other downstream 348773 20473360 ~ 20483713 (+) True G1524181
TU1746485 other downstream 632104 20756691 ~ 20757412 (+) True G1525320
TU1748777 other downstream 2474826 22599413 ~ 22611452 (+) False LOC110497098

Expression Profile