RNA id: TU1746208


Basic Information

Item Value
RNA id TU1746208
length 248
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1525057
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20250407 ~ 20250654 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagcatttgtgttttgtgagtccgccagatcagagacagtagggatgaccagggatgttctcttgataagtgcgtgaattggaccattttcctgtcatgctaagcattcaaaatgtaatgagtaatttcgggtgtcagagaaaatgtatggagtaaaaagtatattattttctttaggaatgcagtgaagtaaaaatgtaaatagtaaagtacagatacccccaaaaacgacttaaatGAACTACCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1746159 lncRNA downstream 54393 20195809 ~ 20196014 (-) True G1525022
TU1746142 lncRNA downstream 82536 20167646 ~ 20167871 (-) True G1525012
TU1746113 lncRNA downstream 146011 20103303 ~ 20104396 (-) True G1524985
TU1746066 lncRNA downstream 198655 20050593 ~ 20051752 (-) True LOC110497091
TU1746016 lncRNA downstream 266185 19983643 ~ 19984222 (-) True G1524900
TU1746210 lncRNA upstream 15513 20266167 ~ 20266455 (-) True G1525059
TU1746211 lncRNA upstream 16593 20267247 ~ 20267735 (-) False G1525060
TU1746213 lncRNA upstream 16660 20267314 ~ 20267735 (-) True G1525060
TU1746182 lncRNA upstream 49902 20300556 ~ 20301395 (-) False G1525035
TU1746183 lncRNA upstream 49902 20300556 ~ 20301395 (-) True G1525035
XM_021571213.2 mRNA downstream 2074 20239912 ~ 20248333 (-) True LOC110495785
XM_021571207.2 mRNA downstream 58229 20178601 ~ 20192178 (-) False LOC110495781
XM_021571208.2 mRNA downstream 58229 20178601 ~ 20192178 (-) True LOC110495781
XM_021571209.2 mRNA downstream 59551 20178601 ~ 20190856 (-) False LOC110495781
XM_021571210.2 mRNA downstream 59551 20178601 ~ 20190856 (-) False LOC110495781
XM_021571215.2 mRNA upstream 620 20251274 ~ 20255220 (-) True LOC110495786
XM_036952237.1 mRNA upstream 8513 20259167 ~ 20286164 (-) False LOC110495787
XM_036952236.1 mRNA upstream 8513 20259167 ~ 20290820 (-) True LOC110495787
XM_021571218.2 mRNA upstream 54033 20304687 ~ 20309450 (-) True LOC110495789
XM_036952239.1 mRNA upstream 100834 20351488 ~ 20416362 (-) False LOC110495790
TU1745849 other downstream 520339 19722745 ~ 19730068 (-) False G1524755
TU1745850 other downstream 524876 19723434 ~ 19725531 (-) True G1524755
TU1745684 other downstream 673307 19573628 ~ 19577100 (-) True LOC110495764
TU1745534 other downstream 1086281 19143985 ~ 19164126 (-) True G1524473
TU1745358 other downstream 1501012 18749125 ~ 18749395 (-) True G1524311
TU1746271 other upstream 320442 20571096 ~ 20571867 (-) True LOC110497093
TU1748552 other upstream 2011402 22262056 ~ 22262462 (-) True G1527230
TU1749447 other upstream 2621391 22872045 ~ 22885833 (-) True G1528018
TU1750411 other upstream 2908904 23159558 ~ 23168591 (-) True LOC110495841
TU1750687 other upstream 3230886 23481540 ~ 23541256 (-) True LOC110495851

Expression Profile